FC868857

Overview
NameFC868857
Unique NameFC868857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11394 contig Ccv1_Contig11394:749..1449. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.663e-91
Identity = 164/234 (70.09%), Postives = 184/234 (78.63%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEP-TRGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            LWGGGFL+QWGVIDYSGGYVIH+SSGIAGLTAAYWVGPR  SD+ERFPPNN+              +GFNGG PY+A+I SS+A+LNT++ A+TSLLVWT LDV FFGKPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM+LHKK S +Q++DDTL VFHTHAV           FAEP LC   L  P ++GAFYGG GG QF KQI GALF  AWN+V
Sbjct:  182 LWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRSASDRERFPPNNILLVLAGAGLLWLGWTGFNGGDPYSANIDSSMAVLNTHICASTSLLVWTILDVFFFGKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWYTMMVLHKKWSFMQRIDDTLGVFHTHAVAGFLGGATTGLFAEPILCSLFLSIPDSKGAFYGGPGGSQFGKQIAGALFVTAWNIV 415          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.408e-90
Identity = 162/235 (68.94%), Postives = 184/235 (78.30%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLP-EPTRGAFYGGK-GGVQFLKQIVGALFXIAWNLV 701
            LWGGGFL+ WGV+DYSGGYVIH+SSG+AG TAAYWVGPR   D+ERFPPNNV              +GFNGG PY+A+I SS+A+LNTN+ AATSLLVWTCLDVIFF KPSVIGAVQGM+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM++HK+  LLQQVDDTL VFHTHAV           FAEP LC   LP   +RGAFY G+ GG+QF++Q+ GALF I WN+V
Sbjct:  190 LWGGGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTGAGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATTGLFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVRQVAGALFIICWNVV 424          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.136e-90
Identity = 157/234 (67.09%), Postives = 184/234 (78.63%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEP-TRGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            +WGGGFLYQWGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNV              SGFNGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPGAGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+VDDTLAVF+THAV           FA P LC   LP P TRGAFYGG GG Q LKQ+ GA F   WN+V
Sbjct:  167 IWGGGFLYQWGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPGAGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPLPATRGAFYGGNGGKQLLKQLAGAAFIAVWNVV 400          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.724e-89
Identity = 165/235 (70.21%), Postives = 185/235 (78.72%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL--CKPTLPEPTRGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            LWGGGFLY+WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPGAGLVQ+WAA+VMGI +GS+PW TMMILHKK +LL +VDDTLAVFHTHAV            A P+L   + T+P   RGAFYGG G  Q  KQ+ GA F IAWNLV
Sbjct:  174 LWGGGFLYRWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGFNGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATPELFSLESTVP-GLRGAFYGG-GIKQIGKQLGGAAFVIAWNLV 406          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.539e-88
Identity = 152/233 (65.24%), Postives = 176/233 (75.54%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLP-EPTRGAFYGGKGGVQFLKQIVGALFXIAWNL 698
            LWGGGFL+ WGVIDY GGYVIHVS+GIAG TAAYWVGPR + D+ERFPPNN+              +GFNGG PYAA+  +S+A+LNTN+  A SL+VWTCLDVIFF KPSV+GAVQGM+TGLVCITP AG+VQ WAA+VMG+L+GSIPW TMMILHK+  +LQ+VDDTL VFHTH V           FAEP LC   LP   +RGAFYGG GG QF KQI G LF +AWN+
Sbjct:  186 LWGGGFLFHWGVIDYCGGYVIHVSAGIAGFTAAYWVGPRAQKDRERFPPNNILFTLTGAGLLWMGWAGFNGGGPYAANSVASMAVLNTNICTAMSLIVWTCLDVIFFKKPSVVGAVQGMITGLVCITPAAGVVQGWAALVMGVLAGSIPWYTMMILHKRSKILQRVDDTLGVFHTHGVAGLLGGLLTGLFAEPTLCNLFLPVADSRGAFYGGAGGAQFGKQIAGGLFVVAWNV 418          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.540e-88
Identity = 162/234 (69.23%), Postives = 179/234 (76.50%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEP-TRGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            LWGGGFLYQWGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYA +I +SIA+LNTNV+AA SLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +WAAI+MGI  GS+PW +MMILHK+ +LLQ+VDDTLAVFHTHAV           FA P L       P  RGAFYGG G  Q  KQI GALF + WN+V
Sbjct:  183 LWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNITASIAVLNTNVSAAASLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWAAILMGICGGSLPWFSMMILHKRSALLQKVDDTLAVFHTHAVAGLLGGFLTGLFALPDLTAVHTHIPGARGAFYGG-GIAQVGKQIAGALFVVVWNVV 415          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.233e-86
Identity = 154/234 (65.81%), Postives = 178/234 (76.07%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEPT-RGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            LWGGGFLYQWGVIDYSGGYVIH+SSG+AG TAAYWVGPRLKSD+ERF PNN+              +GFNGGAPYA ++ +++A+LNTNV+AATSLL WTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLV +W+A++MG+ +GS+PW TMMILHKK + L +VDDTLAVFHTHAV            A P+LC    P P  RG FYG   G Q  KQ+ GALF   WNL+
Sbjct:  187 LWGGGFLYQWGVIDYSGGYVIHLSSGVAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWLGWAGFNGGAPYAPNVTATVAVLNTNVSAATSLLTWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVHTWSAMLMGMFAGSVPWFTMMILHKKSTFLMKVDDTLAVFHTHAVAGILGGVLTGLLATPELCALDCPIPNMRGVFYGSGIG-QLGKQLGGALFVTVWNLI 419          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMT41_ORYSJ (Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 84/208 (40.38%), Postives = 106/208 (50.96%), Query Frame = 3
Query:  108 VGPRLKSDKERFPPNNVXXXXXXXXXXXXXX-SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV--XXXXXXXXXXXFAEPQLCKPTLPEPTR--GAFY------GGKGGVQFLKQIVGALFXIAWNL 698
            VGPR + D+E FPPNNV               +GFNGGAPYAA++ +S+ ++NT++  ATSLLVW  LD   FG+ SVI AVQGM+TGLVC+TP A LV                      LHK+  LL +VDDTLAV HTH V              AEP+  +    +  R  G  Y       G G  Q   Q+ G  F +A N+
Sbjct:   43 VGPRTEKDREAFPPNNVLLTLAGAGLLLWMGWTGFNGGAPYAANVDASVTVVNTHLCTATSLLVWLLLDSFVFGRLSVISAVQGMITGLVCVTPAARLV----------------------LHKRSRLLARVDDTLAVLHTHGVAGSLSGVLTGLLLLAEPRFARLFFGDDPRYVGLAYAVRDGRAGSGLRQVGVQLAGIAFVVALNV 228          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: Y663_METTH (Putative ammonium transporter MTH_663 OS=Methanobacterium thermoautotrophicum GN=MTH_663 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 75/233 (32.19%), Postives = 114/233 (48.93%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEPTRGAFYGGKGGVQFLKQIVGALFXIAWNLV 701
            +WGGGFL Q G +D++GG V+H++SG+A L   Y +G R  +   R  P+N+               GFN G+   A   ++ A L TN AAA  ++ W  +D +  GKP+V+G + G + GLV ITP AG V   AA+++G+++  I ++ +  L  +       DD L VF  H +           FA      P + E   G  YG  G  Q   Q++      A++ V
Sbjct:  156 VWGGGFLAQLGALDFAGGTVVHINSGVAALALVYLLGKRKDT---RLLPHNLGYSVIGASLLWFGWFGFNAGSALTAGGLAASAFLVTNTAAAAGMVSWVIMDYLKVGKPTVLGGISGAVAGLVAITPAAGFVTVPAALIIGLVTSVISYLAVSYLKPRLG----YDDALDVFGIHGMSGIWGSVATGLFA-----APFINELGTGLIYGNPG--QLTAQVIAVAVVAAYSFV 374          
BLAST of FC868857 vs. ExPASy Swiss-Prot
Match: AMTB_ECOLI (Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 75/233 (32.19%), Postives = 112/233 (48.07%), Query Frame = 3
Query:    3 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG--SIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKPTLPEPTRGAFYGGKGGVQFLKQIVGALFXIAWN 695
            +WGGG L   G +D++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G+++G   +  VTM+        L +VDD   VF  H V           FA   L      E       G   G Q L Q+      I W+
Sbjct:  169 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML------KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAE-------GVTMGHQLLVQLESIAITIVWS 388          
The following BLAST results are available for this feature:
BLAST of FC868857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
AMT33_ORYSJ1.663e-9170.09Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
AMT31_ORYSJ1.408e-9068.94Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT2_ARATH3.136e-9067.09Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT21_ORYSJ7.724e-8970.21Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
AMT32_ORYSJ6.539e-8865.24Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
AMT23_ORYSJ8.540e-8869.23Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT22_ORYSJ1.233e-8665.81Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT41_ORYSJ1.810e-2940.38Putative ammonium transporter 4 member 1 OS=Oryza ... [more]
Y663_METTH5.822e-2832.19Putative ammonium transporter MTH_663 OS=Methanoba... [more]
AMTB_ECOLI3.195e-2632.19Ammonia channel OS=Escherichia coli (strain K12) G... [more]

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Properties
Property NameValue
Genbank descriptionC31005F10EF AbioticL1 Citrus clementina cDNA clone C31005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868857 ID=FC868857; Name=FC868857; organism=Citrus clementina; type=EST; length=701bp
GTCTTTGGGGTGGTGGCTTCCTCTATCAGTGGGGTGTCATTGATTATTCT
GGTGGCTATGTTATTCACGTCTCCTCAGGAATTGCCGGTCTCACTGCCGC
CTATTGGGTTGGACCCAGGCTAAAGAGCGACAAAGAGAGGTTTCCTCCGA
ATAATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTGTGGATGGGATGG
TCGGGTTTCAACGGTGGGGCTCCTTATGCTGCTCATATCGCCTCTTCGAT
CGCTATTCTAAACACAAATGTAGCGGCGGCCACGAGCCTTCTTGTTTGGA
CATGTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTTATCGGAGCTGTT
CAGGGCATGATGACTGGCCTTGTTTGCATCACCCCAGGAGCTGGGCTGGT
ACAATCATGGGCGGCTATTGTAATGGGCATTCTTTCTGGTAGCATTCCAT
GGGTAACTATGATGATTCTTCACAAGAAGTGTAGTCTTCTTCAACAGGTG
GATGACACACTGGCTGTGTTTCACACGCACGCGGTGACTGGGCTGTTGGG
CGGGCTACTGACCGGGCTATTTGCGGAGCCACAACTGTGCAAGCCCACAC
TACCAGAGCCCACAAGAGGAGCATTCTACGGGGGGAAAGGCGGGGTGCAA
TTTCTGAAGCAGATTGTTGGGGCTCTGTTTGNTATCGCCTGGAATTTAGT
T
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