FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9411 contig Ccv1_Contig9411:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.191e-41
Identity = 67/149 (44.97%), Postives = 104/149 (69.80%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R     KGL+K   +S +E    ++ F+T ++ +P ++E+Y+++ ++  ++KM GY+PD    L DVED+++EH+L  HSE+LA+AF ++    +  I++ KNLRVC DCHS  +FIS I  R+IIVRD+NRFHHF+ G CSC DYW
Sbjct:  675 EIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823          

HSP 2 Score: 34.2686 bits (77), Expect = 2.191e-41
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            EH GY VL+SN+YA++ KW  V
Sbjct:  652 EHVGYHVLLSNMYASAGKWEGV 673          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.318e-41
Identity = 72/150 (48.00%), Postives = 101/150 (67.33%), Query Frame = -2
Query:  184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            GKLR  M++KG+KK   +S IE       F   D  +P   E++  +E + + +K AGY+   S  LHDVE+E++E M+ YHSE+LAVA+GIM ++    I+V KNLRVC DCH+A ++++ I  R II+RD NRFHHF+ G+CSC DYW
Sbjct:  632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          

HSP 2 Score: 33.8834 bits (76), Expect = 6.318e-41
Identity = 12/23 (52.17%), Postives = 20/23 (86.96%), Query Frame = -3
Query:  630 EHTGYFVLMSNIYAASNKWREVG 698
            E++G +VL+SN+YA+S +W +VG
Sbjct:  610 ENSGMYVLLSNLYASSGRWGDVG 632          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.032e-40
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEA-----VIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R  MK+KGLKK    S +E  + I  F   DR +P   E+Y++++ +  ++K  GY+PD   ALHDVE+ED+E  L  HSEKLA+ F +MN   E       I++TKNLR+C DCH A + IS I  R+II+RD NRFH F  G CSC DYW
Sbjct:  534 IRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686          

HSP 2 Score: 37.3502 bits (85), Expect = 4.032e-40
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = -3
Query:  600 EHTGYFVLMSNIYAASNKWREVGS*EKI*KIRG 698
            E +GY+VL+SNIYA + +W EV +   I K +G
Sbjct:  510 EQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKG 542          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.354e-39
Identity = 67/153 (43.79%), Postives = 104/153 (67.97%), Query Frame = -2
Query:  184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNL---TPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            G++R+DM++K +KK    S IE    I  F+ +D+ +  W+E+Y+K++ +  +I+  GY+      LHD+ +E++E+ L YHSEKLAVA+G+M +     E+ ++V  NLR+C DCH  F+ IS IY+R+IIVRD  RFH F+ G+CSC D+W
Sbjct:  429 GRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581          

HSP 2 Score: 33.113 bits (74), Expect = 3.354e-39
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = -3
Query:  630 GYFVLMSNIYAASNKWREVG 689
            G FVL+SN+YAA  +W++VG
Sbjct:  410 GDFVLLSNVYAAQGRWKDVG 429          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.374e-39
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = -2
Query:  184 REDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 624
            R  MK   +KK   FS IE    I  F   DR N   + +Y+KV+ M  +IK  GY+P+    L DVE+E++E  L YHSEKLAVAFG+++  P   I+V KNLRVC DCH+A ++I+ +Y R+I++RDANRFH F+ G CSC DYW
Sbjct:  844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          

HSP 2 Score: 28.1054 bits (61), Expect = 7.374e-39
Identity = 10/17 (58.82%), Postives = 16/17 (94.12%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            +VL+SN+YAA++KW E+
Sbjct:  824 YVLLSNMYAAASKWDEM 840          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.129e-38
Identity = 70/151 (46.36%), Postives = 101/151 (66.89%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            + K+R+ MK+  +KK   FS IE    +  F   D  +P   E+Y  ++ +  EIK  GY+PD +  LHD+E+E +E +L +HSEKLA+AFG+++   +  +++ KNLRVCNDCH+A +FIS +  R+IIVRD  RFHHF+ G CSC DYW
Sbjct:  636 AAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786          

HSP 2 Score: 25.7942 bits (55), Expect = 2.129e-38
Identity = 9/27 (33.33%), Postives = 16/27 (59.26%), Query Frame = -3
Query:  618 EHTGYFVLMSNIYAASNKWREVGS*EK 698
            E++G +  ++N+Y+A  KW E     K
Sbjct:  615 ENSGAYSALANLYSACGKWEEAAKIRK 641          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.131e-38
Identity = 75/156 (48.08%), Postives = 103/156 (66.03%), Query Frame = -2
Query:  184 KQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 651
            K+MA   KLR  M+ KGL+K  A S IE      GF + DR +P   ++ + ++++  +++  GY+ D S  LHDV++E +  +L  HSE+LAVAFGI+N  P   I+VTKN+R+C DCH A +FIS I  R+IIVRD +RFHHF  G CSC DYW
Sbjct:  563 KEMA---KLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715          

HSP 2 Score: 29.6462 bits (65), Expect = 2.131e-38
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E+ G +VLM N+YA++ +W+E+
Sbjct:  544 ENMGAYVLMCNMYASNGRWKEM 565          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.145e-38
Identity = 69/137 (50.36%), Postives = 97/137 (70.80%), Query Frame = -2
Query:  184 KPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 594
            K   +S IE    +  F ++DR++P    ++KK++ +  ++K+AGY P+L  ALH+VE+E +E +L +HSEKLAVAFG + L   + IQV KNLR+C DCH A +FIS I +R+IIVRD  RFHHF+ G+CSC DYW
Sbjct:  525 KVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 661          

HSP 2 Score: 25.7942 bits (55), Expect = 6.145e-38
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            +V ++NIYA+ N+W +V
Sbjct:  490 YVQLANIYASKNRWEDV 506          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.206e-38
Identity = 71/152 (46.71%), Postives = 107/152 (70.39%), Query Frame = -2
Query:  184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639
            ++ ++R +MK +G++K    S IE+G ++  F   D  +P  +++   +E++   ++  GY+PD SC LH+VE++++E +L  HSEKLA+AFGI+N +P  +I+V KNLRVCNDCH A +FIS I  R+II+RD  RFH F+ GTCSC DYW
Sbjct:  739 KATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.989e-38
Identity = 70/152 (46.05%), Postives = 103/152 (67.76%), Query Frame = -2
Query:  184 RSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 639
            ++  +R+  K + L K   +++IE G+    F + D+ +P  KE+Y+K+E +  +++ AGY P+   ALHDVE+E+RE M+  HSE+LA+AFG++   P   I++ KNLRVC DCH+  + IS I  R I+VRDANRFHHF+ G CSC DYW
Sbjct:  641 QAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792          

HSP 2 Score: 23.483 bits (49), Expect = 7.989e-38
Identity = 8/24 (33.33%), Postives = 16/24 (66.67%), Query Frame = -3
Query:  627 EHTGYFVLMSNIYAASNKWREVGS 698
            ++ GY VL+SNI++A   + +  +
Sbjct:  621 DNVGYHVLLSNIHSADRNYPQAAT 644          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP348_ARATH2.191e-4144.97Pentatricopeptide repeat-containing protein At4g33... [more]
PP301_ARATH6.318e-4148.00Pentatricopeptide repeat-containing protein At4g02... [more]
PP271_ARATH4.032e-4047.71Putative pentatricopeptide repeat-containing prote... [more]
PPR71_ARATH3.354e-3943.79Pentatricopeptide repeat-containing protein At1g34... [more]
PP347_ARATH7.374e-3949.66Pentatricopeptide repeat-containing protein At4g33... [more]
PP168_ARATH2.129e-3846.36Pentatricopeptide repeat-containing protein At2g22... [more]
PP251_ARATH2.131e-3848.08Putative pentatricopeptide repeat-containing prote... [more]
PP316_ARATH6.145e-3850.36Pentatricopeptide repeat-containing protein At4g16... [more]
PP285_ARATH6.206e-3846.71Pentatricopeptide repeat-containing protein At3g57... [more]
PP341_ARATH7.989e-3846.05Pentatricopeptide repeat-containing protein At4g30... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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