FC868867

Overview
NameFC868867
Unique NameFC868867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8010 contig Ccv1_Contig8010:93..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_HUMAN (p21-activated protein kinase-interacting protein 1 OS=Homo sapiens GN=PAK1IP1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  116 FSYPAHLSPIXXXXXXXXXXXXXXXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRI 652
            F++ AH + +                  IH+YD+      GA+ HH S ++T L FY        R+L S + DG + I+DA  +  L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A ++++   GE++ ++ + K+ I+Q +   +   +  +KRI
Sbjct:   36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHH-SGTITCLKFYGN------RHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRI 207          
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_DANRE (p21-activated protein kinase-interacting protein 1-like OS=Danio rerio GN=pak1ip1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.206e-19
Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 2
Query:  116 FSYPAHLSPIXXXXXXXXXXXXXXXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRILCAAPGENGVL 685
            F++ AH + +                  I LYD+   +  GA+ HH+ + ++ L FY   +L       S   DG + ++    +  L +++ HK  V  L+VH SGKLAL+VG D  L   NL+ GR +F   I + A ++ +   G+K+ +V  +KV I+  +   ++  +   KRI C    +N +L
Sbjct:   41 FTHHAHTASLNAVSSSNQFIATGSKDETIQLYDMCKKTEHGALLHHDGT-ISCLEFYGTSHL------LSGGQDGLICVWSTKKWECLKTIRAHKGQVTSLSVHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKQNAEIVLWSPDGDKYAVVVNDKVDIYTLDSATIIGTIAFTKRISCLKFLKNSLL 223          

HSP 2 Score: 24.6386 bits (52), Expect = 9.206e-19
Identity = 7/21 (33.33%), Postives = 16/21 (76.19%), Query Frame = 1
Query:   10 MSLIVGSYEKFIWGYKLKPSN 72
            + L+ G YE+ ++GY++ P++
Sbjct:   12 IELVAGCYEQIVFGYRVCPAD 32          
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_XENLA (p21-activated protein kinase-interacting protein 1-like OS=Xenopus laevis GN=pak1ip1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.788e-18
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  116 FSYPAHLSPIXXXXXXXXXXXXXXXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRILCA 661
            F++ AH + +                  I +YD+      GA+ HH + ++T L FY   +L       S + DG + +++   +    + K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I K A ++ +  SGEK+ +V  + V ++Q E   ++  ++  KRI  A
Sbjct:   34 FTHHAHTASVSVLAVNNRFVATGSRDETIQIYDMKKKVEHGALLHH-NGTITCLEFYGNTHL------LSGAEDGLICVWNTKKWECQQTFKAHKGQVLSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKKNAHIVHWSPSGEKYVVVIHDTVDVYQLETAAVVGTINNPKRISSA 208          

HSP 2 Score: 22.7126 bits (47), Expect = 5.788e-18
Identity = 7/17 (41.18%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   10 MSLIVGSYEKFIWGYKL 60
            + L+VG YE+ ++GY++
Sbjct:    5 IKLLVGCYEQVLFGYRV 21          
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_BOVIN (p21-activated protein kinase-interacting protein 1 OS=Bos taurus GN=PAK1IP1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 51/179 (28.49%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  116 FSYPAHLSPIXXXXXXXXXXXXXXXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRI 652
            F++ AH + +                  IH+YD+      GA+ HH + ++T L F+        R+L S + DG + ++DA  +  L S++ HK  V  L++H SG+LAL+VG D  L   NLV GR +F   I + A ++++   GEK+ +V   ++ ++Q +   +   +  ++R+
Sbjct:   36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALMHH-NGTITCLKFHGN------RHLISGAEDGLICVWDARRWECLKSIRAHKGHVTFLSIHPSGRLALSVGTDKTLRTWNLVEGRSAFIKNIKQSAHIVEWSPKGEKYVVVILNRIDVYQLDTASVSGTITNERRV 207          
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_MOUSE (p21-activated protein kinase-interacting protein 1 OS=Mus musculus GN=Pak1ip1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  200 IHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRI 652
            IH+YD+      GA+ HH + +VT L F+  Q+L       S + DG + I+D   +  L + K H+  V  L++H SGKLAL+VG D  L   NL+ GR +F   I + A ++++  SG K+ +V + KV +++     +   +   KRI
Sbjct:   64 IHIYDMKRKVEHGALVHH-AGTVTCLKFHGNQHL------ISGAEDGHICIWDVKRWKCLKTFKAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKENAHIVEWSPSGGKYIVVVQNKVDVYRLGTASVSGTITNGKRI 207          
BLAST of FC868867 vs. ExPASy Swiss-Prot
Match: PK1IP_CHICK (p21-activated protein kinase-interacting protein 1-like OS=Gallus gallus GN=PAK1IP1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 55/179 (30.73%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  116 FSYPAHLSPIXXXXXXXXXXXXXXXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLCSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDXKLLCELDGKKRI 652
            F++ AH + +                  I +YD+      GA+  H + ++T L FY   +L       S + DG + I++   +  L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   + + A +IK+   GEK+  V   KV I++ +   +   +  +KRI
Sbjct:   29 FTHHAHTASLSAVAVNSKYVVTGSRDESIQIYDMRKKVEHGALLQH-NGTITCLEFYGTAHL------LSGAEDGLICIWNTKRWECLKSIKAHKGHVTSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNLKQNAHIIKWSPDGEKYVTVITNKVDIYKLDTASITGTITIEKRI 200          
The following BLAST results are available for this feature:
BLAST of FC868867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PK1IP_HUMAN1.485e-2032.40p21-activated protein kinase-interacting protein 1... [more]
PK1IP_DANRE9.206e-1928.42p21-activated protein kinase-interacting protein 1... [more]
PK1IP_XENLA5.788e-1830.22p21-activated protein kinase-interacting protein 1... [more]
PK1IP_BOVIN9.006e-1828.49p21-activated protein kinase-interacting protein 1... [more]
PK1IP_MOUSE9.958e-1733.77p21-activated protein kinase-interacting protein 1... [more]
PK1IP_CHICK1.301e-1630.73p21-activated protein kinase-interacting protein 1... [more]
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Properties
Property NameValue
Genbank descriptionC31005G09EF AbioticL1 Citrus clementina cDNA clone C31005G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868867 ID=FC868867; Name=FC868867; organism=Citrus clementina; type=EST; length=690bp
GCCATAATCATGAGTCTAATAGTCGGATCCTATGAAAAATTCATCTGGGG
ATACAAATTAAAACCCTCGAACCATTATTCCTCAGACCAAAAAAACCCTA
ACCCTTACCCAGCTCTTCTCATACCCCGCCCACCTCTCTCCCATCACCAC
CGTCGCCGTATCCGGCACCGCAGCCGCTTCCGGAGGCACTGACGACACCA
TCCACCTCTACGACCTCTCCACTTCATCTTCCCTCGGGGCCATCCACCAC
CACGAGTCTTCCTCTGTCACGTCTTTAGCCTTTTACACTCCGCAGAACCT
CTCAGTCCCTCGCAATCTCTGTTCAACTTCTGCCGATGGGTTCGTTTCCA
TTTTTGACGCTGACCCATTTGTGCTTTTGACGTCTGTTAAGGTTCATAAG
AAGGGAGTCAATGACTTGGCTGTTCATCATTCCGGGAAGCTTGCGTTGAC
TGTCGGAAGGGACGATTGCTTGGCGATGGTGAATTTGGTGAGAGGGAGGA
GGAGTTTTTATCACAAAATTGGGAAAGAAGCGAGCTTGATTAAGTTTGAT
GGGAGCGGGGAGAAGTTTTTTATGGTTACTGAAGAGAAAGTTGGGATTCA
TCAGGCTGAGGATGNCAAGTTGCTTTGCGAATTGGATGGCAAGAAAAGGA
TTCTTTGTGCCGCCCCTGGAGAGAATGGAGTTCTATTCAC
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