FC868875

Overview
NameFC868875
Unique NameFC868875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868875 vs. ExPASy Swiss-Prot
Match: FPP4_ARATH (Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.507e-38
Identity = 97/206 (47.09%), Postives = 120/206 (58.25%), Query Frame = 1
Query:    1 VKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR-NENCAVCSSEADENKIKQXXXXXXXXXXXXXCQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKH 615
            VK+ L SAQKSN + ETQLKCM ESYRSLET + ELE E+  L+ KIE+LE+EL DEK +H  A+AKC+ELEEQLQR N+NC  CS   D+ K KQ             CQETILLLGKQLKS+ PQ+E + S  S+                 Q  +  E +  TS N Q  ++ + S  D      +PS N     KSP+ SKH
Sbjct:  769 VKSDLESAQKSNGMGETQLKCMVESYRSLETRSSELEIELTSLKGKIENLEDELHDEKENHREALAKCQELEEQLQRNNQNCPNCSVIEDDPKSKQDNELAAAAEKLAECQETILLLGKQLKSMCPQTEQVASSPSQEQ---------------QALNPEEEEYATSTNPQDSKLSSPSDKD------TPSMNTM---KSPVASKH 950          
BLAST of FC868875 vs. ExPASy Swiss-Prot
Match: FPP6_ARATH (Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 82/197 (41.62%), Postives = 114/197 (57.87%), Query Frame = 1
Query:    1 VKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN--KIKQXXXXXXXXXXXXXCQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEAS 585
            +++Q  SAQ+SN LA+TQL+CM ESYRSLE+ A +LE +VN L+ KI+ LENEL+DEK +H  A+ +C ELEE +QR+ N ++ + + +E   K KQ             CQETI +LGKQLKS RPQ E + SP +      E       T S+ + ++A +D   S N  P             SP  PS++E S
Sbjct:  827 IRSQFDSAQRSNRLADTQLRCMTESYRSLESRAADLEIDVNQLKEKIQKLENELEDEKCNHQEAILRCHELEEHIQRHRNTSLVAEDDEEADIKSKQERELSAAAEKLAECQETIFVLGKQLKSFRPQPEQMRSPQTRNESYSEEEELGTTTTSVPK-NYAVVDEGDSVNEVPR---------FMESPKCPSDSETS 1013          
BLAST of FC868875 vs. ExPASy Swiss-Prot
Match: FPP5_ARATH (Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    1 VKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQXXXXXXXXXXXXXCQETILLLGKQLKSLRPQSEVI 390
            +K+QL S++   SLAETQLKC+ ESY+SL+ HA+ELEA+V  L  + + LE     EK  H   +AKC++L+E++QRNE C  CSS   + +  Q             CQETI LL +QL+SL+PQS  I
Sbjct:  785 LKSQLTSSEDLQSLAETQLKCVTESYKSLDLHAKELEAKVKSLEEETKRLEMAFTTEKHGHEETLAKCRDLQEKMQRNETCENCSS--SKLQPNQEKDIVSATEKLAACQETIHLLSQQLQSLQPQSNHI 912          
The following BLAST results are available for this feature:
BLAST of FC868875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FPP4_ARATH2.507e-3847.09Filament-like plant protein 4 OS=Arabidopsis thali... [more]
FPP6_ARATH1.574e-3241.62Filament-like plant protein 6 OS=Arabidopsis thali... [more]
FPP5_ARATH5.995e-2446.15Filament-like plant protein 5 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC31005H06EF AbioticL1 Citrus clementina cDNA clone C31005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868875 ID=FC868875; Name=FC868875; organism=Citrus clementina; type=EST; length=664bp
GTTAAAGCACAGCTGGCTTCGGCTCAGAAGTCAAATAGCTTGGCTGAGAC
ACAGCTCAAATGTATGGCAGAGTCATACAGGTCGCTTGAAACACATGCCC
AGGAATTAGAGGCTGAAGTGAACCTTTTGCGAGCAAAAATTGAAAGTTTG
GAAAATGAGCTTCAAGATGAAAAAATGAGTCATCACAATGCTATGGCAAA
ATGCAAGGAACTTGAGGAGCAATTACAAAGGAATGAGAATTGCGCTGTTT
GTTCCTCAGAGGCTGATGAAAACAAGATCAAACAGGACAGAGACTTGGCT
GCTGCAGCAGAGAGACTAGCTGAGTGTCAAGAAACTATACTTCTTCTGGG
CAAGCAGTTGAAATCTTTGCGTCCACAGTCGGAGGTCATAGGATCTCCAT
ACAGCGAGAGGAGTCAAAAAGGTGAATTCTTGCCCGGAGAACCTGCTACT
GCAAGTTTACAAGAGTTTGATCATGCAGAAATGGACAGTGTTACTTCTGC
CAATGCACAGCCACATAGAGTGGGTGCCGAATCCCCTCTGGATTTATATA
CCTCCCCATGTAGCCCATCTGAGAATGAAGCAAGCATCAACAAATCGCCG
ATCAATTCAAAGCATCCGAAACACAGGCCTACCAAATCAACCTCCTCATC
CTCCACTTCTGCCC
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