FC868876

Overview
NameFC868876
Unique NameFC868876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15183 contig Ccv1_Contig15183:30..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868876 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.094e-32
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 2 
Query:  152 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKXXXXXXXXXXXXXXXXXAQALTYEEALQQXXXXXXXXXXXXXFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV 670
            MEAL  A   P+SVL ++RSEPRK  SL     PK    +    +Q++FL+ F                   A++LTYEEALQQ              I+ + +F T+NPL IAGGV  LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP++
Sbjct:    1 MEALKTATFSPMSVLSEKRSEPRKPFSLPNLFPPK----SQRPISQESFLKRF--NGGLALLTSVLSSATAPAKSLTYEEALQQSMTTSSSFDSDG-LIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNI 167
The following BLAST results are available for this feature:
BLAST of FC868876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH2.094e-3250.00Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC31005H07EF AbioticL1 Citrus clementina cDNA clone C31005H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868876 ID=FC868876; Name=FC868876; organism=Citrus clementina; type=EST; length=670bp
GGAAGGCTGAAGCTAAAGATTGTGATTCTCTGGCCTTTGCTTGCTCACCT
CTCCATCACATCCTGAAAAGAAAACAAATTCTACATAGCATGCTGGCTCA
AGCATTTCCATCAATTCTTTGAGAGGCCAAAAGATCATATAAAATTATGC
CATGGAGGCCCTCAATCCAGCGGGCTTGATACCTTTATCGGTTCTTTGTG
ACAGAAGATCAGAACCCAGAAAAATTCAATCACTTTCCACGGCTTCTTTA
CCCAAACTCGCAACTTCTGCTTCTAATAAAACCACCCAACAAAATTTTCT
AGAGTGTTTTGCAAAGAGTGTGCATGGCGGTTTAGTGCTGTTATCTTCAG
TTCTTGGTACTGGTTTAGCTCAAGCTTTAACATATGAAGAAGCGCTGCAG
CAGTCAGCAGGCTCTTCAGCATCTGATGTTGATGCAAGTGGATTTATTGA
CAGCGTAATCAGTTTTGGAACAGAGAATCCTTTAGCTATAGCTGGTGGTG
TCACCATTTTGGCTGTTCCATTAGTTTTGTCTCAGGTTCTGAACAAGCCT
AAGTCATGGGGTGTTGAGTCTGCAAGGAATGCTTATGCAAAGTTGGGTGA
CGATGCGAGTGCCCAGTTGCTTGATATAAGAGCTCCCGTGGAATTTCGGC
AAGTAGGTAGTCCTGATGTC
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