FC868878

Overview
NameFC868878
Unique NameFC868878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+KTKEGVVLAVEKRITSP
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+KTKEGVVLAVEKRITSP
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK+GVVLAVEKR+TSP
Sbjct:    1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSP
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSP
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+ T EGVVLAVEKRITSP
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG++T EGV LAVEKRITSP
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MF+TR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+KTK+ VVL VEKR+TSP
Sbjct:    1 MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSP 57
[Close]
BLAST of FC868878 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 2 
Query:   77 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSP 247
            MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSP
Sbjct:    1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSP 57
The following BLAST results are available for this feature:
BLAST of FC868878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PSA5_SOYBN1.459e-24100.00Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5B_ARATH3.251e-2498.25Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH3.251e-2498.25Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_ORYSJ4.245e-2496.49Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5_MOUSE3.043e-2291.23Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN3.043e-2291.23Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_DROME3.043e-2292.98Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA5_BOVIN3.043e-2291.23Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA5_SCHPO8.852e-2287.72Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_YEAST5.738e-2185.96Proteasome component PUP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31005H10EF AbioticL1 Citrus clementina cDNA clone C31005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868878 ID=FC868878; Name=FC868878; organism=Citrus clementina; type=EST; length=736bp
GAGAAAACTCTCGCTCTAACTCCGTTCCGGTATGAACTCTTAAGCTCAGG
TTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTAT
GATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGA
ATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGA
CGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTG
CTGGTTTGTTTAATTCTTGTTGTGCTTTTTCTTTACTTGTAAATGCTTGG
TCTTGTGTGAGTATATATATCCGTAAATTTCATGCTTCTACAATTCTTTA
GGCATGTGCTTTAATGTACTACAAAGCAAAAAAAGGTCAGTCCCTCAGCA
GGAGGGCAATAAAATGCATATTAAAGGATCATGATTCACATTAATCGTTT
GGATAGAAAAAGGGCAATGTTATTCAAAATAACGACATGTGATTAAGATA
AATAGCTTTTAAAAGCCAAATAGCAACAAACCCAAAGGACAAGCCTGGGC
ATTGATATACCGAAAGCAGATATTCTTCTATGACGATGGAAGCAAATTCT
GCAGCCAACACACATATATCCCCACCATATGTCTTAATTGGGCTGGGATG
TTTACATATTTATGAGATATGTGTATGGTTTTGATGTTACATATTTATGA
GTTTCTGTACAGTCTGAGTCCAGGAATCTAATTTGA
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