FC868880

Overview
NameFC868880
Unique NameFC868880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868880_ssr113 microsatellite FC868880_ssr113:113..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 45/163 (27.61%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  129 SNNITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIP 617
            S+ + +D   L+  K  ++ DP +LL      + S C+W GI+C+ N  +V  L +    L G+IP                    G +P S +    L+FLD + N +SG + S + ++ +++ + L++N  +G+LP N+ + L +L  + L+ N F  +IP
Sbjct:   19 SSALNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCN-NDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLAS-LRNLTVVSLENNYFSGEIP 179          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 49/175 (28.00%), Postives = 79/175 (45.14%), Query Frame = 3
Query:  144 TDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            TD+QALL  K  +  D   +L+ +W  +  +C W G+TC   + RV  L++ +  L G I P                   G +P  +  +  L++LD   N L G +   ++N S ++ +RL +NR  G +P  +   L +L  L L  N    K+P++L        L L  N
Sbjct:   24 TDRQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSEL-GSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHN 196          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 53/180 (29.44%), Postives = 79/180 (43.89%), Query Frame = 3
Query:  129 SNNITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            ++++  D++AL+AL+D +   P  LL   W      CTW G+ C+  S RV AL +    L G +P                    G +P     +  L++L    N  SG + SF+F + +I+ I L  N F G +P N+ N    L  L+L  N     IP    K QQ    + Q N
Sbjct:   22 TSDLEADRRALIALRDGVHGRP--LL---WNLTAPPCTWGGVQCE--SGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNV-NSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLN 193          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 45/178 (25.28%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  135 NITTDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            +++++  +L++ K   + +P+ L + N +S+ S C W+G+TC +   RV +L +   +L+G IP +                  G +P  I+ +  L+ LD + N L+G +   +  +  ++ + L++N FSG LP +    LP L +L +  N    +IP  + K    + L +  N
Sbjct:   22 DLSSETTSLISFK-RSLENPSLLSSWNVSSSASHCDWVGVTCLLG--RVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLN 196          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 3
Query:  141 TTDQQALLALKDHIIYDPTNLLAHNWTS-NTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKI 614
            + + QAL   K+ I  DP  L+  NW   N+  C W GI C  +   V  ++IS  +++G + P+                  G +P  I  +  LK LD  +N L G + + + ++S I+ I L +N  +G+LP  + N L +L+ L +D+N     +
Sbjct:   25 SNEVQALRRFKEAIYEDPL-LVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGN-LKYLRELHIDRNRLQGSL 181          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 3
Query:  237 CTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            C+W G+ CD  +  V  L  S  +L G IP                      +PS  ++++TLK L+ + N++SGS SS V N   +  + ++ N FSG +P+ + + L  L+ L LD N F   IP  L  CQ   +++L  N
Sbjct:   55 CSWQGLFCDSKNEHVIMLIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKISALPSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAV-DSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSN 197          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 44/175 (25.14%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  144 TDQQALLALKDHIIYDPTNLLAHNWTSNTSVCTWIGITCDVNSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            TD QALL  K  +  +    +  +W  ++  C WIG+TC     RV +L++  F L G I P                     +P  +  +  L++L+ + N L G + S + N S +  + L++N     +P  +   L  L  L L KN      P++L        L+  +N
Sbjct:   30 TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSEL-GSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYN 203          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  159 LLALKDHIIY-DPTNLLAHNWTSNTSVCTWIGITCDVNSH-RVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKC 635
            L AL+D I + +P      N +S+T  C W GITC+ N+  RV  L++    L G +                      ++P SI+ +  L+ LD + N LSG + + + N+ ++    L++N+F+G LP +IC+    ++ + L  N F     S   KC
Sbjct:   36 LEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICHNSTQIRVVKLAVNYFAGNFTSGFGKC 195          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 51/182 (28.02%), Postives = 79/182 (43.41%), Query Frame = 3
Query:  129 SNNITTDQQALLALKDHIIYDPTNLLAHNWTS-NTSVCTWIGITCDV-------NSHRVAALDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPAT 650
            S ++ +D Q LL LK+    D  N L HNW   + + C WIG+ C         NS  V +LD+S  NL G + P                   G++P  I     L+ +   +NQ  GS+   +  +S +    + NN+ SG LP+ I + L +L+ L    N     +P +L    +  T
Sbjct:   30 SESLNSDGQFLLELKNRGFQDSLNRL-HNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGD-LYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209          
BLAST of FC868880 vs. ExPASy Swiss-Prot
Match: Y2579_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 3
Query:  288 LDISQFNLQGTIPPQXXXXXXXXXXXXXXXXXXGNVPSSIYTMHTLKFLDFTDNQLSGSVSSFVFNMSSIVEIRLTNNRFSGELPKNICNYLPHLKALFLDKNMFHSKIPSALSKCQQPATLNLQFN 668
            LD+   NL G IPP                   G +P SI+++  L  LDF+DN LSG +   V  M S+  + L +N  +G++P+ + + LP LK L L  N F   IP+ L K      L+L  N
Sbjct:  246 LDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTS-LPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTN 371          
The following BLAST results are available for this feature:
BLAST of FC868880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
Y4372_ARATH6.706e-1527.61Probable LRR receptor-like serine/threonine-protei... [more]
Y3475_ARATH8.758e-1528.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5659_ARATH5.677e-1429.44Probable inactive receptor kinase At5g16590 OS=Ara... [more]
EXS_ARATH5.677e-1425.28Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y1634_ARATH2.157e-1328.30Probable LRR receptor-like serine/threonine-protei... [more]
Y2242_ARATH3.679e-1331.25Probable LRR receptor-like serine/threonine-protei... [more]
EFR_ARATH6.276e-1325.14LRR receptor-like serine/threonine-protein kinase ... [more]
PSKR1_ARATH8.197e-1328.57Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y2317_ARATH1.071e-1228.02Probable leucine-rich repeat receptor-like protein... [more]
Y2579_ARATH1.826e-1233.86Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionC31006A01EF AbioticL1 Citrus clementina cDNA clone C31006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868880 ID=FC868880; Name=FC868880; organism=Citrus clementina; type=EST; length=670bp
ATTACAAAATTAACCGCTAACAAACCAAGCAATCTTTCAGGGAGAGAAAC
TTTAGTCTCAGTATGATCACTGTGTCATTAACCCACTTCCTGCTTCTTTG
CTTGGTTGTTGTAGCAGCAGCAGCAGCAAGCAACAATATTACCACAGACC
AACAAGCTCTTCTTGCCCTGAAAGATCATATAATTTATGATCCGACCAAC
CTTTTAGCCCATAATTGGACCTCGAATACATCTGTTTGTACCTGGATTGG
CATCACTTGTGATGTCAATAGCCATAGAGTCGCAGCCTTAGATATTTCTC
AATTCAATCTACAAGGCACCATCCCTCCTCAACTTGGAAACCTCTCTTCA
CTCACAACGCTTAATCTTAGTCATAACAAGCTTTCTGGAAACGTTCCCTC
CTCCATCTACACAATGCATACGCTAAAATTTCTTGACTTCACTGATAACC
AGCTCTCTGGTTCGGTGTCTTCCTTCGTCTTCAACATGTCTTCAATAGTA
GAAATTCGTTTGACCAATAACAGATTTTCTGGTGAGCTTCCGAAAAATAT
TTGCAACTATCTTCCTCATTTGAAAGCCCTTTTTTTGGACAAAAACATGT
TTCATAGCAAAATTCCTTCTGCTTTATCAAAGTGCCAACAACCTGCAACA
TTAAATTTGCAGTTCAATAA
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