FC868882

Overview
NameFC868882
Unique NameFC868882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4991 contig Ccv1_Contig4991:11..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 8.656e-87
Identity = 151/189 (79.89%), Postives = 171/189 (90.48%), Query Frame = 2
Query:  107 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVL IGYIE
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE 203          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.251e-84
Identity = 151/189 (79.89%), Postives = 169/189 (89.42%), Query Frame = 2
Query:  107 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVL IGYIE
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE 200          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.297e-78
Identity = 141/191 (73.82%), Postives = 159/191 (83.25%), Query Frame = 2
Query:  110 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVL +GYIE
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIE 204          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 4.972e-42
Identity = 93/172 (54.07%), Postives = 108/172 (62.79%), Query Frame = 2
Query:  176 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+ +G  E
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAE 199          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  149 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            + ++ G G   T+ K    ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L +G++E
Sbjct:   32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVE 160          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 56/177 (31.64%), Postives = 73/177 (41.24%), Query Frame = 2
Query:  158 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            RF       APKKS           W P  K+      PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  +L+  ++L +G++E
Sbjct:   41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVE 155          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 49/152 (32.24%), Postives = 65/152 (42.76%), Query Frame = 2
Query:  233 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLGIGYIE 670
            W P  +       PEWLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++ +G++E
Sbjct:   55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVE 155          
BLAST of FC868882 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 2
Query:  233 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLGIGYIE 670
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVE 154          
The following BLAST results are available for this feature:
BLAST of FC868882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CB4A_ARATH8.656e-8779.89Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.251e-8479.89Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.297e-7873.82Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE4.972e-4254.07Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL3.588e-1631.11Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC7.482e-1431.64Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC2.843e-1332.24Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB11_SOLLC7.003e-1232.89Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC31006A03EF AbioticL1 Citrus clementina cDNA clone C31006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868882 ID=FC868882; Name=FC868882; organism=Citrus clementina; type=EST; length=672bp
GAGGAAATAACAAGTTACAATTTTCATCAACACTACACACCCCACCGTAA
GTTAGCCACAAGCCATGGCCTCAACCACAGCAGCACCAGCCGCCACATCA
TCTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTAT
CCAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGA
AACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAG
GCACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCC
GTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGT
TGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGG
ATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGT
CTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGG
CCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATT
ACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCT
GGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTT
TGGGTATTGGCTACATTGAGTT
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