FC868885

Overview
NameFC868885
Unique NameFC868885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9414 contig Ccv1_Contig9414:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868885 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.391e-49
Identity = 95/154 (61.69%), Postives = 118/154 (76.62%), Query Frame = 3
Query:  201 LEVCVKASSASPNRLGDCPFCQRVLLTIEEKHLPYDMKLVDLGNKPEWFLKISPEGKVPVIKLDEKWLPDSDVITQSLEEKYPDPPLRTPPEKASVGSKIFSMFIGFLKSKDPSDGSEQALLNELNSFNDYIK-ENGPFIIGGKVSAADFVLGP 659
            LE+CVKA+  +P+ LGDCPF QR LLT+EEK L Y + L++L +KP+WFL ISP+GKVPV+K+D+KW+ DSDVI   LEEKYPDPPL+TP E ASVGS IF  F  FLKSKD +DGSE ALL EL +  +++K  +GPFI G +VSA D  L P
Sbjct:    3 LEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAP 156          
BLAST of FC868885 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  252 CPFCQRVLLTIEEKHLPYDMKLVDLGNKPEWFLKISPEGKVPVIKLDEKWLPDSDVIT-QSLEEKY------PDPPLRTPPEKASVG--SKIFSMFIGFLKS--KDPSDGSEQALLNELNSFNDYIKENGPFIIGGKVSAADFVLGP 659
            CPF QR L+ ++ K + +++  ++L NKPEWF + +P G VPV++  +  L    VIT + L+E Y      PD P +   +K ++   SK+  +   F++S  K+ S    +AL NE     + +     F+ G   S  D++  P
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKSFLGGDSPSMVDYLTWP 178          
BLAST of FC868885 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  252 CPFCQRVLLTIEEKHLPYDMKLVDLGNKPEWFLKISPEGKVPVIKLDEKWLPDSDVIT-QSLEEKYPDPPL--RTPPEKA------SVGSKIFSMFIGFLKSKDPSD--GSEQALLNELNSFNDYI-KENGPFIIGGKVSAADFVLGP 659
            CPF QR L+ ++ K + +++  ++L NKPEWF + +P G VPV++  +  L    VIT + L+E YP+  L    P EKA       + SK+ S+   F+++K   D  G ++ L  E +   + +  +   F  G  +S  D+++ P
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWP 179          
BLAST of FC868885 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 43/148 (29.05%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  252 CPFCQRVLLTIEEKHLPYDMKLVDLGNKPEWFLKISPEGKVPVIKLDE-KWLPDSDVITQSLEEKYPDPPL--RTPPEKA------SVGSKIFSMFIGFLKSKDPSD--GSEQALLNELNSFNDYI-KENGPFIIGGKVSAADFVLGP 659
            CPF QR LL +  K + + +  ++L NKPEWF + +P G VPV++  + + + +S +  + L+E YP   L    P EKA       + SK+  + I F++ ++ +D  G ++ L  E +   + + K+   +  G  +S  D+++ P
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWP 179          
The following BLAST results are available for this feature:
BLAST of FC868885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHAR1_ARATH1.391e-4961.69Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
GSTO1_MOUSE1.151e-1130.61Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_RAT3.349e-1131.08Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG5.713e-1129.05Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
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Properties
Property NameValue
Genbank descriptionC31006A06EF AbioticL1 Citrus clementina cDNA clone C31006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868885 ID=FC868885; Name=FC868885; organism=Citrus clementina; type=EST; length=660bp
AACTGCAAAACGGTATCGGCTGAAGGCAGAGGCAGAGGAAGGAAATGTCG
ACGCTTAGAATTCAACCAAGCACAACACCTGCAATATCGTCAACTATAAA
GAACCTGCACCTTGGCTTCTCCTTCCGCCTCCCCTGCAAAAACTACGGCG
TTTCGAAGCGACCTCGGAACCTCTCCGTGATGGCCGTGGCTACGGATCCT
CTTGAAGTCTGCGTCAAAGCTTCGTCCGCTTCTCCCAACAGACTCGGCGA
CTGTCCATTTTGCCAAAGGGTGTTGTTGACTATCGAGGAAAAGCATCTCC
CATATGACATGAAGTTGGTAGATTTGGGAAACAAGCCAGAATGGTTCTTA
AAAATTAGCCCCGAAGGTAAAGTTCCTGTTATAAAACTGGATGAGAAGTG
GCTTCCAGATTCAGATGTTATCACACAATCTCTGGAAGAAAAATACCCAG
ATCCGCCACTACGAACCCCGCCTGAGAAGGCTTCAGTCGGATCAAAGATC
TTCTCTATGTTTATTGGTTTTCTGAAAAGCAAAGACCCCAGTGATGGATC
TGAGCAGGCATTGCTGAATGAGCTAAATTCATTCAATGATTACATCAAGG
AAAATGGCCCTTTTATCATTGGAGGAAAGGTTTCTGCTGCAGATTTTGTC
CTGGGACCCA
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