FC868888

Overview
NameFC868888
Unique NameFC868888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14369 contig Ccv1_Contig14369:757..1475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.228e-113
Identity = 183/223 (82.06%), Postives = 198/223 (88.79%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPNR---PMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLP 662
            R T  MMTWN+TCTYSQFLAQ+TPTCCVSLSSFYNETIV CPTCACGCQNN TESG+C++P TPHLASVV+ P K      P+VQCT HMCPIRVHWHVK NYKEYWRVKITITNFNY +NY+ WNLV QHPN DN+TQ+FSF YKSLTPY GLNDTAMLWG+KFYNDFLSEAG  GNVQSE+LFRKD STFTFEKGWAFPRRIYFNGDNCVMPPPD+YP+LP
Sbjct:  208 RTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNYKSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLP 430          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.717e-107
Identity = 170/226 (75.22%), Postives = 192/226 (84.96%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGK-PNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPY-EGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVP 674
            R T  +MTWNVTCTYSQFLAQKTP+CCVSLSSFYN+TIV+CPTC+CGCQNNGT  GSC+N  +P+L S ++ PGK   +P+VQCTSHMCPIR+HWHVKLNYKEYWRVKITITNFNY MNY+ WNLV QHPNF+N+TQLFSF YK LTPY   +NDTAM WG+KFYND L +AG  GN QSELL RKD+  FTF+KGWAFP R+YFNGDNCVMPPPDAYPWLP   P
Sbjct:  208 RATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSAIDGPGKWTGQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQLFSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLRKDSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPNASP 433          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.825e-107
Identity = 171/222 (77.03%), Postives = 194/222 (87.39%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPNR--PMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLP 662
            RVT  +MTWNVTCTYSQFLAQKTPTCCVSLSSFYN+TIVSCPTC+CGC+N  ++ G+C++PK P +ASV+  PGK     P+VQCT HMCP+R+HWHVK+NYK+YWRVK+TITNFNY MNYS WNLVVQHPNFDNLTQ FSF YK LTPY  +NDT +LWGIKFYND L +AG  GNVQSELLF+K+AS FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLP
Sbjct:  205 RVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNT-SQPGNCVDPKGPRIASVIPNPGKNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQHPNFDNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEASAFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLP 425          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 7.975e-105
Identity = 169/221 (76.47%), Postives = 191/221 (86.43%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPN-RPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLP 662
            R T   MTWNVTCTYSQ +AQ++PTCCVSLSSFYN+TIV+CPTC+CGCQNN  + GSC+   +P+LASVVNT  K +  P+VQCTSHMCPIRVHWHVK+NYKEYWRVKIT+TNFNY MNYS WNLV QHP+FDNLT +FSF YKSL PY  +NDTAMLWGIK+YND L  AG +GNVQSELLF+KD  +FTFEKGWAFPRR+YFNGDNCVMPPPDAYPWLP
Sbjct:  200 RTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNN--KPGSCVEGNSPYLASVVNTHNKDSLTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVINDTAMLWGIKYYNDLLMTAGPDGNVQSELLFKKDPKSFTFEKGWAFPRRVYFNGDNCVMPPPDAYPWLP 418          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 375.555 bits (963), Expect = 1.504e-103
Identity = 170/230 (73.91%), Postives = 195/230 (84.78%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPN-RPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVPGLLFS 689
            R T  ++TWN+TCTYSQFLA+KTPTCCVSLS+FYNETIV CPTC+CGCQN+ +++G+C++PK   +ASVV   GK N  P++QCT HMCPIRVHWHVK +YKEYWRVK+ ITNFNY MNYS WNLVVQHPNFDNLT+LFSF YK L PY  +NDTAMLWGIKFYNDFLS+AG  GNVQSELLF+K+   FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLP   P +  S
Sbjct:  200 RKTQSLLTWNITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNS-SQAGTCVDPK---IASVVPALGKNNLEPLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTKLFSFNYKPLNPYLNINDTAMLWGIKFYNDFLSQAGPVGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNASPNIATS 425          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.401e-101
Identity = 168/239 (70.29%), Postives = 198/239 (82.85%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPN-RPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWL-PTQVPGLLFSTSFSIISW 713
            R T   +TWNVTCTYSQF+AQ+ PTCCVSLSSFYNETIV+CP CACGCQN   + GSC+   +P+LASVVN PGK +  P+VQCT HMCPIRVHWHVKLNY++YWRVK+TITN+NY MNYS WNLVVQHPNF+N++ +FSF YKSL PY  +NDTAM+WG+K+YND L  AG +GNVQSELLFRKD STFTF+KGWAFPRRIYFNG++CVMP PD YPWL P+  P   F T F ++S+
Sbjct:  202 RTTQAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNK--KPGSCVEGNSPYLASVVNGPGKGSLTPLVQCTPHMCPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWNLVVQHPNFENVSTVFSFNYKSLNPYGVINDTAMMWGVKYYNDLLMVAGPDGNVQSELLFRKDRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLPPSSTP--RFRTVFLLMSF 436          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.460e-90
Identity = 145/236 (61.44%), Postives = 181/236 (76.69%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASV-VNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVPGLLFSTSFSII 707
            R T  +MTWNVTCTYSQFLA+K P+CCVS SSFYN+TI  CP+CACGC+N      SC+   +  L    +NTP K N P++QCT HMCP+RVHWHVK NYK+YWRVKI ITNFNY MN++LW L +QHPN +N+TQ+FSF YK ++PY  +NDT M +G KFYND L EAG +GNVQSE+L +KD  TFTF++GWAFPR++YFNGD C++PPPD+YP+LP    G   S S +I+
Sbjct:  192 RKTQALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCENKK----SCVKADSKILTKKGLNTPKKDNTPLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVFSFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPSGNVQSEVLLQKDQKTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSAQGNFASFSLTIL 423          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.019e-85
Identity = 148/253 (58.50%), Postives = 172/253 (67.98%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGC-----------------------QNNGTESG-----SCINPKTPH-LASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVP 674
            R T  +MTW VTCTYSQ LA + PTCCVS SSFYN TIV C  CACGC                       +N+G   G      CI   +   L++ VNTP K   P++QCTSHMCPIRVHWHVKLNYK+YWR KI ITNFNY MNY+ W LV QHPN +N+T++FSF YK L PY  +NDT M +G+KFYND L EAG  GNVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LP   P
Sbjct:  194 RRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGLKFYNDLLMEAGPFGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSAP 446          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.019e-85
Identity = 148/253 (58.50%), Postives = 172/253 (67.98%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGC-----------------------QNNGTESG-----SCINPKTPH-LASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVP 674
            R T  +MTW VTCTYSQ LA + PTCCVS SSFYN TIV C  CACGC                       +N+G   G      CI   +   L++ VNTP K   P++QCTSHMCPIRVHWHVKLNYK+YWR KI ITNFNY MNY+ W LV QHPN +N+T++FSF YK L PY  +NDT M +G+KFYND L EAG  GNVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LP   P
Sbjct:  194 RRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGLKFYNDLLMEAGPFGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSAP 446          
BLAST of FC868888 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.261e-82
Identity = 138/237 (58.23%), Postives = 167/237 (70.46%), Query Frame = 3
Query:    3 RVTHPMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNN-----GTESGSCINPKTPHLASVVNTPGKPN--------RPMVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPTQVP 674
            R T  +MTWNVTCTYSQ LA K P+CCVS SSFYN+TIV C  CACGC  +         G  +        +  N  G+ N         P++QCT+HMCP+RVHWHVKLNY+EYWR KITI NFNY MNY+ W LV QHPN DN+T++FSF YK +  Y  +NDTAM +G+K++ND L EAG +GNVQSE+L RKDA TFTF +GWAFPR++YFNGD C MPPPD+YP+LP   P
Sbjct:  193 RKTQALMTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGCDAHKPCVRSERDGKRLAVTGKKHDANANAHGRGNGVAAAAMAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVFSFDYKPVVSYGSINDTAMFYGLKYFNDQLMEAGPHGNVQSEVLMRKDARTFTFRQGWAFPRKVYFNGDECQMPPPDSYPYLPNAAP 429          
The following BLAST results are available for this feature:
BLAST of FC868888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COBRA_ARATH1.228e-11382.06Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL3_ORYSJ1.717e-10775.22COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL1_ARATH3.825e-10777.03COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ORYSJ7.975e-10576.47COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL2_ARATH1.504e-10373.91COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ORYSJ2.401e-10170.29COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH1.460e-9061.44COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL5_ORYSJ7.019e-8558.50COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI7.019e-8558.50COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]
COBL6_ORYSJ3.261e-8258.23COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC31006A10EF AbioticL1 Citrus clementina cDNA clone C31006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868888 ID=FC868888; Name=FC868888; organism=Citrus clementina; type=EST; length=719bp
GGAGAGTCACACATCCTATGATGACCTGGAATGTCACATGCACATATTCA
CAGTTCTTGGCTCAAAAGACACCCACCTGTTGTGTTTCTCTCTCTTCCTT
CTACAATGAAACAATAGTAAGCTGCCCAACGTGTGCTTGTGGCTGTCAAA
ACAATGGAACGGAATCTGGGAGTTGCATAAATCCAAAGACTCCACATTTG
GCATCAGTTGTGAATACTCCAGGAAAACCCAACAGACCAATGGTCCAGTG
TACCAGCCATATGTGTCCCATCCGAGTTCATTGGCATGTCAAGCTCAATT
ATAAGGAGTACTGGCGTGTGAAGATCACAATCACTAATTTTAATTACGCA
ATGAATTACTCACTGTGGAATCTAGTCGTGCAACACCCCAACTTTGATAA
TCTCACACAGCTTTTCAGCTTTTATTACAAGTCATTAACTCCTTATGAAG
GCTTAAATGATACAGCCATGCTGTGGGGAATAAAGTTTTACAATGATTTT
CTCTCTGAAGCAGGCTCTAATGGGAACGTGCAGTCAGAGCTGCTGTTTCG
AAAAGACGCATCAACATTTACTTTTGAGAAGGGTTGGGCTTTCCCTAGAA
GGATTTATTTTAATGGAGATAACTGTGTGATGCCACCTCCAGATGCCTAC
CCGTGGTTGCCAACGCAAGTTCCCGGCCTGTTATTCTCTACTTCGTTCAG
CATAATATCTTGGCATCTT
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