FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.261e-65
Identity = 118/221 (53.39%), Postives = 145/221 (65.61%), Query Frame = 1
Query:    7 CQKTTH-----RFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFTQCQN 654
            C++ +H     R +D+TI                     W VAFLCE+CFTFVW+L T  KW+P  Y TYP+RL ER+ ELPP+D+FVTTADP  EPP++ VNTVLSLLAV+YPA++LACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYN+RVRAPF YF    + P  A   EF +DWE  K EYE+L   +E A  +S   D   + E F     N
Sbjct:   12 CERISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDERVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF---RNSPEAAEGSEFSKDWEMTKREYEKLSQKVEDATGSSHWLDAEDDFEAFLNTKSN 229          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.431e-63
Identity = 115/204 (56.37%), Postives = 138/204 (67.65%), Query Frame = 1
Query:   25 RFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            R +D+TI                 NG  W VAFLCESCF+FVW+L+T TKW+P     YP RL ER+ +LP +D+FV TADP  EPPI+ VNTVLSLLAV+YPA++LACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYN++VRAPFRYFL            EF +DWE  K EYE+LC  +E A  +S       ELE F
Sbjct:   23 RAVDLTILGLLFSLLLHRILYMSQNGIIWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDERVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYFLNPF---AATEGSEFSRDWEMTKREYEKLCRKVEDATGDSHLLGTDNELEAF 223          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.871e-62
Identity = 116/215 (53.95%), Postives = 145/215 (67.44%), Query Frame = 1
Query:    7 CQKTTH-----RFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            C+K ++     R +D+TI                 N   W VAFLCES F+F+W+L T  KW+P SY +YP+RL ER+ +LP +D+FVTTADP  EPPIL  NT+LSLLAV+YPA++LACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYNI+VRAPFRYFL   + P    S EF +DWE  K EYE+L   +E A  +S   D   + E F
Sbjct:   12 CEKISYKNYFLRVVDLTILGFLFSLLLYRILLMNQNNSVWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDERVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYFL---NPPAATESSEFSKDWEITKREYEKLSRRVEDATGDSHWLDAEDDFEDF 223          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 7.358e-59
Identity = 110/217 (50.69%), Postives = 141/217 (64.98%), Query Frame = 1
Query:    7 CQKTTH-----RFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWE--FQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            C++ +H     R +D+TI                 N   W VAFLCESCF+F+W++ T  KW+P     YP RL ER+ +LP +D+FV TADP  EPPI+ VNTVLSLLAV+YPA++LACYVSDDGCSPL ++SL EASKF K+W PFCKKYN+RVRAPFRYFL      P  ++ +  F +DW+ MK EY +LC  +E A  +S   D   + E F
Sbjct:   12 CERISHKSYILRIVDLTILVLLFSLLWYRILHMCENNTIWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLN-----PLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAF 223          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.299e-55
Identity = 102/176 (57.95%), Postives = 125/176 (71.02%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            W VAF CESCF  V +L T  KW+P     +P RL ER+ +LP +D+FV TADP  EPPI+ V+TVLSLLAV+YPA++LACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYN RVRAP RYFL+          +EF +DWEK K EYE+L   +E A  +S   D+  + E F
Sbjct:   51 WLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDERVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPIS--VATEDYEFNRDWEKTKREYEKLRRKVEDATGDSHMLDVEDDFEAF 224          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.875e-54
Identity = 106/217 (48.85%), Postives = 136/217 (62.67%), Query Frame = 1
Query:    7 CQKTTH-----RFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWE--FQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            C++ +H     R +D+TI                 N   W +AF CESCF+ VW++ T  KW+P     Y   L ER+ +LP LD+FV TAD   E PI+TVNTVLSLLAV+YPA++LACYVSDDGCSPL ++SL EASKF K+W PFCKKYN+RVRAPFRYFL      P  ++ +  F +DW+ MK EY +LC  +E A  +S   D   + E F
Sbjct:   12 CERISHKSYVLRAVDLTILGLLYSLLLYRILHISENDNVWLLAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLN-----PLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAF 223          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = 1
Query:  118 AFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA--HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            A  CE+ FTF+W+L    KW+P+ ++T+P+ L ERI ELP +D+FVTTADP LEPP++TVNTVLSLLA+DYPA   +LACYVSDDGCSPL  Y+L EA++FA+ WVPFC+++ + VRAPFRYF    +  P  +  +F +DW  MK EYE+L   IE A   S      GE   F
Sbjct:   53 ALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAERIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGP--ADGKFLEDWTFMKSEYEKLVHRIEDADEPSLLRHGGGEFAEF 225          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.485e-40
Identity = 85/175 (48.57%), Postives = 111/175 (63.43%), Query Frame = 1
Query:   97 NGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYP--AHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESD-EPPCASSWEFQQDWEKMKEEYERLCGNIE 582
            +G  W VA +CE+ F  +  L    KW+P+ + T P+ L    +          ELP +D+ VTTADP LEPP++TVNTVLSLLA+DYP    RLACYVSDDGCSPL  ++L EA+ FA  WVPFC++Y + VRAPFRYF   S  E    +  +F  DW  MK+EY++L   I+
Sbjct:   79 DGGVWRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.991e-40
Identity = 87/183 (47.54%), Postives = 114/183 (62.30%), Query Frame = 1
Query:   91 KHNGFA------WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYP--AHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESD-EPPCASSWEFQQDWEKMKEEYERLCGNIE 582
            +H+G A      W VA +CE+ F  +  L    KW+P+ + T P+ L    +          ELP +D+ VTTADP LEPP++TVNTVLSLLA+DYP    RLACYVSDDGCSPL  ++L EA+ FA  WVPFC++Y + VRAPFRYF   S  E    +  +F  DW  MK+EY++L   I+
Sbjct:   71 RHHGGAGGDAGVWRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.061e-37
Identity = 77/165 (46.67%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW PI+  TY  RL  R +      +L P+D+FV+T DP  EPPI+T NT+LS+LAVDYP ++++CYVSDDG S L F +L E S+FA+ WVPFCKKYN+  RAP  YF  + D         F +D   MK EYE     I A
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEKNKLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYFSEKIDYLKDKVQTTFVKDRRAMKREYEEFKVRINA 408          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH5.261e-6553.39Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB2_ARATH6.431e-6356.37Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB3_ARATH1.871e-6253.95Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB6_ARATH7.358e-5950.69Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB1_ARATH1.299e-5557.95Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLB5_ARATH1.875e-5448.85Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLH1_ORYSJ1.817e-4954.29Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLH2_ORYSJ4.485e-4048.57Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI9.991e-4047.54Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CESA4_ARATH6.061e-3746.67Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
back to top