FC868891

Overview
NameFC868891
Unique NameFC868891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_HALOH (MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 2
Query:   71 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            PVPIDI +  + + LVITGPNTGGKT+ LKTVGL V+M ++GLHI + E   +  F+ V+ADIGDEQS+ Q+LSTFS H+ +I               DEIG GT+P EG ALG+++LE   E G + TIATTH+ E+K+  YS D  ENA +EFD   L+P Y++L G+PG
Sbjct:  321 PVPIDITVGNEFKTLVITGPNTGGKTVALKTVGLFVLMVQAGLHIPAEEETVISIFNGVYADIGDEQSIEQNLSTFSSHINRIKRFLGKADARSLVLLDEIGVGTDPREGAALGVAILEHLRERG-VTTIATTHYSEIKSYAYSQDGVENASVEFDMETLQPTYRLLMGIPG 491          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_SYNY3 (MutS2 protein OS=Synechocystis sp. (strain PCC 6803) GN=mutSB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43
Identity = 92/189 (48.68%), Postives = 120/189 (63.49%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI------------------XXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPI + I  + RV+ ITGPNTGGKT+ LKT+GL  +MAK GL+I + E  ++PWF  + ADIGDEQSL Q+LSTFSGH+ +I  I                              DE+GAGT+P EG+AL ++LL   A+    LT+ATTH+GELK LKY +  FENA +EFD+  L P Y++LWG+PG
Sbjct:  331 VPITLTIDSQIRVIAITGPNTGGKTVTLKTLGLVALMAKVGLYIPAKETVEMPWFAQILADIGDEQSLQQNLSTFSGHICRIIRILQALPSGVQDVLDPEIDSPNHPIFPSLVLLDEVGAGTDPTEGSALAIALLRHLADQ-PCLTVATTHYGELKALKYQDARFENASVEFDDQSLSPTYRLLWGIPG 518          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOTH (MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.111e-42
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPID +I      LV+TGPNTGGKT+ LKTVGL  +M ++GLHI ++E  K+  F  V+ADIGDEQS+ QSLSTFS H+K I  I            DE+GAGT+P EG AL MS+LE     GS  T+ATTH+ +LK    +  F ENAC EF+   L+P Y++L GVPG
Sbjct:  318 VPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTLMTQAGLHIPANEGTKMSIFKKVYADIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVLFDELGAGTDPTEGAALAMSILEYLRNKGS-TTVATTHYSQLKAYAVTTKFVENACCEFNVETLRPTYRLLIGVPG 487          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_STRU0 (MutS2 protein OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 89/175 (50.86%), Postives = 118/175 (67.43%), Query Frame = 2
Query:   62 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            L +PV  D+  A    V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ E +K+  FD+++ADIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+P EG +L M++LE    + ++ T+ATTH+ ELK     +D+ ENA MEFD   LKP Y+ + GVPG
Sbjct:  307 LKNPVANDLHFADDLAVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADEGSKIAVFDAIYADIGDEQSIEQSLSTFSSHMTHIVDILEESNSNSLVLFDELGAGTDPQEGASLAMAILEQLRLT-NIKTMATTHYPELKAYGIESDYVENASMEFDSQSLKPTYRFMQGVPG 480          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_PELTS (MutS2 protein OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 93/189 (49.21%), Postives = 120/189 (63.49%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG----YRIITSIYLMSEVL 628
            VPIDI +      LVITGPNTGGKT+ LKT GL V+MA+SGLHI + E +++  F  VFADIGDEQS+ QSLSTFS H+  I  I            DE+GAGT+P EG AL  S+LE    +G+  T+ATTH+GELK    + +  ENA +EFD + L+P Y++L G PG    + I   + L  EV+
Sbjct:  314 VPIDIRLGADFDTLVITGPNTGGKTVALKTAGLLVLMAQSGLHIPAGEGSRLGIFRQVFADIGDEQSIEQSLSTFSSHMNNIVEIIGKAGPDSLVLLDELGAGTDPAEGAALAQSILEKLHSAGA-KTVATTHYGELKDFALTRERVENASVEFDAITLRPTYRLLIGKPGRSNAFEIAARLGLPEEVV 501          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_ALKMQ (MutS2 protein OS=Alkaliphilus metalliredigens (strain QYMF) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 87/171 (50.88%), Postives = 114/171 (66.67%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP +++I    + LVITGPNTGGKT+ LKT+GL  MMA+SGLH+ +    ++  FD +FADIGDEQS+ QSLSTFS H+  I NI            DE+GAGT+P EG ALGM++L    E  ++ T+ATTH+ ELK    +N+  ENA +EFD   L P Y++L GVPG
Sbjct:  317 VPTNLWIGETFQTLVITGPNTGGKTVTLKTLGLLSMMAQSGLHVPADYGTRLAIFDQIFADIGDEQSIEQSLSTFSSHMTNIVNIVEEVTSNSLVLFDELGAGTDPTEGAALGMAILNHLREM-NVTTVATTHYSELKQYALTNEGVENASVEFDVATLSPTYRLLIGVPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_SYMTH (MutS2 protein OS=Symbiobacterium thermophilum GN=mutS2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPID+ I      LVITGPNTGGKT+ LKT+GL V+MA++GLH+ +    +V  F  VF DIGDEQS+ QSLSTFSGH+  I  I            DE+GAGT+P EG AL MS+LE   + G+  T+ATTH+ ELKT  Y+    ENA +EFD   L+P +++L GVPG
Sbjct:  312 VPIDVHIGITFDTLVITGPNTGGKTVALKTMGLFVLMAQAGLHLPAGHGTRVGVFQQVFVDIGDEQSIEQSLSTFSGHMTNIIRILDALEGPALVLLDELGAGTDPTEGAALAMSILEHLHKRGA-KTVATTHYSELKTYAYTRSRVENASVEFDVETLRPTFRLLIGVPG 481          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_ALKOO (MutS2 protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VP  +++      LVITGPNTGGKT+ LKT+GL  +MA+SGLH+ +    K+  FD VFADIGDEQS+ QSLSTFS H+  I NI            DE+GAGT+P EG AL M++L +  E G+ +T+ATTH+ ELK    S +  ENA +EFD   L P YK+L GVPG
Sbjct:  317 VPNTMWLGEDFHTLVITGPNTGGKTVTLKTLGLLTLMAQSGLHVPADYGTKLAIFDQVFADIGDEQSIEQSLSTFSSHMTNIVNIMDNVTEQSLVLFDELGAGTDPTEGAALAMAILNSLREMGT-VTVATTHYSELKQYALSTEGVENASVEFDVNTLSPTYKLLIGVPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_THETN (MutS2 protein OS=Thermoanaerobacter tengcongensis GN=mutS2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.040e-40
Identity = 87/171 (50.88%), Postives = 114/171 (66.67%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPIDI I R+   LVITGPNTGGKT+ LKTVGL  +MA +G++I + E +++  F+ VF DIGDEQS+ QSLSTFS H+  I +I            DE+GAGT+PLEG+AL MS+L+    +G   TIATTH+ ELK         ENA +EFD   L+P Y+++ G+PG
Sbjct:  317 VPIDIHIGREFTTLVITGPNTGGKTVTLKTVGLLTLMAMAGINIPAEEKSQISIFEDVFVDIGDEQSIEQSLSTFSSHMTNIVSILKKVNKNSLVLLDELGAGTDPLEGSALAMSILDFLHRTG-CRTIATTHYSELKQYALKTKGVENASVEFDVETLRPTYRLIIGIPG 486          
BLAST of FC868891 vs. ExPASy Swiss-Prot
Match: MUTS2_CALS8 (MutS2 protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.040e-40
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 2
Query:   74 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGVPG 586
            VPIDI + +   VL+ITGPNTGGKT+ LKTVGL  ++ +SG+ I + E +++  F  +FADIGD+QS+ QSLSTFS H+K I  I            DEIGAGT+P EG AL  ++L+  +E GS + IATTH+GELK      D FENA  EFD   LKP Y++L G+PG
Sbjct:  314 VPIDIHLGKDFDVLIITGPNTGGKTVTLKTVGLFCLLCQSGIFIPADEDSQLCIFQKIFADIGDDQSIVQSLSTFSAHMKNIIEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFAQQEDRFENASCEFDVKTLKPTYRLLIGIPG 483          
The following BLAST results are available for this feature:
BLAST of FC868891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS2_HALOH7.695e-4451.74MutS2 protein OS=Halothermothrix orenii (strain H ... [more]
MUTS2_SYNY32.924e-4348.68MutS2 protein OS=Synechocystis sp. (strain PCC 680... [more]
MUTS2_CLOTH1.111e-4252.05MutS2 protein OS=Clostridium thermocellum (strain ... [more]
MUTS2_STRU07.202e-4250.86MutS2 protein OS=Streptococcus uberis (strain ATCC... [more]
MUTS2_PELTS1.229e-4149.21MutS2 protein OS=Pelotomaculum thermopropionicum (... [more]
MUTS2_ALKMQ1.605e-4150.88MutS2 protein OS=Alkaliphilus metalliredigens (str... [more]
MUTS2_SYMTH2.096e-4152.05MutS2 protein OS=Symbiobacterium thermophilum GN=m... [more]
MUTS2_ALKOO4.668e-4151.46MutS2 protein OS=Alkaliphilus oremlandii (strain O... [more]
MUTS2_THETN1.040e-4050.88MutS2 protein OS=Thermoanaerobacter tengcongensis ... [more]
MUTS2_CALS81.040e-4051.46MutS2 protein OS=Caldicellulosiruptor saccharolyti... [more]

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Properties
Property NameValue
Genbank descriptionC31006B05EF AbioticL1 Citrus clementina cDNA clone C31006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868891 ID=FC868891; Name=FC868891; organism=Citrus clementina; type=EST; length=708bp
CACGGAAAGGCGAAAAAGATCATCTCTTTCACCATCAGAGATGCAGGTTT
CTGCATTGGAACTTGCTCACCCGGTTCCGATTGATATTTTTATTGCTCGG
AAAACAAGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTAT
TTGCTTAAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTC
ACATTTTATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCAGTTTTT
GCTGATATTGGTGATGAACAGTCCTTGTCACAATCTTTATCTACCTTCTC
TGGCCACTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAAT
CGTTGGTGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGC
ACAGCGCTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTT
ATTGACAATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACA
GTAATGACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTA
AAGCCAGCTTACAAGATCCTTTGGGGAGTACCAGGTTACAGAATTATAAC
TTCTATCTATTTGATGTCTGAAGTGTTAATGAGTTTATTGATTTGGTTCT
TTCAAGCCTTAGTGATACAGCTGTAAGTCTTCCTGAAATTTACTCCATTT
TGTCAATA
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