FC868894

Overview
NameFC868894
Unique NameFC868894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15267 contig Ccv1_Contig15267:44..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 85/192 (44.27%), Postives = 131/192 (68.23%), Query Frame = 3
Query:   99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI+TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 85/192 (44.27%), Postives = 131/192 (68.23%), Query Frame = 3
Query:   99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI+TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 86/191 (45.03%), Postives = 130/191 (68.06%), Query Frame = 3
Query:  102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI+TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 83/191 (43.46%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI+TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ +    + ++  K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFSQEENTENMK 223          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.055e-40
Identity = 85/203 (41.87%), Postives = 130/203 (64.04%), Query Frame = 3
Query:   81 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            SP   KS  E +     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI+TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D +++ K
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 79/185 (42.70%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  120 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXFDADPSKEKK 674
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LIETL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +  +  K
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211          
BLAST of FC868894 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 78/180 (43.33%), Postives = 115/180 (63.89%), Query Frame = 3
Query:  114 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIETLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRXF 647
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +IET+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208          
The following BLAST results are available for this feature:
BLAST of FC868894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB1.350e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN1.350e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN1.350e-4345.0326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE7.407e-4243.4626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI9.055e-4041.8726S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO1.266e-3342.7026S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST1.654e-3343.3326S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionC31006B09EF AbioticL1 Citrus clementina cDNA clone C31006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868894 ID=FC868894; Name=FC868894; organism=Citrus clementina; type=EST; length=723bp
GACCGAATCAGAATCCCTCTCTGACCTCACTCTCTGAAAATTAGGGTTTT
TTCCCCCTTATTTAACAATTTTGGGCATAATCTCCGGCGATTATCAAATC
GAAGATGGAGGGTAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTTGA
ATACCGAGAAGCAGATGAGATTATCCGGTGACGTGGCCGGCACCAAGAAG
GCGGTGACGGAAATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAGAC
TCTCAATGAACAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAAGC
AGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAGTACATCGATCAGACG
CCAGATCTTGATACTCGTATAGAGCTCATCGAAACACTAAATAGTGTCTC
TGCAGGGAAGATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAAC
TTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATCTG
ATGCAAGAAGTGGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAA
AATCGCCTTCATTCTTGAACAAGTCCGTCTGTGCCTAGACCGCCAAGATT
ATGTCCGTGCACAAATTCTTTCAAGGAAGATTAGTCCAAGAGNTTTTGAT
GCTGATCCTTCGAAAGAAAAGAAAAGCCAAAAGAGGTGACAATGTTGNTG
AAGAGCTCCTGCTGATATACATC
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