FC868895

Overview
NameFC868895
Unique NameFC868895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.833e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D R+G  MA+DA+V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  + D KT  + EL++  GM LDRGY SPYFITN KT++C LD
Sbjct:  145 DLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFN-ELEVVEGMKLDRGYTSPYFITNQKTQKCELD 246          

HSP 2 Score: 39.6614 bits (91), Expect = 4.833e-27
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  576 VLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +LI++ED+E+D LA+L+LN +    K C I  PG
Sbjct:  277 LLIVSEDVESDALATLILNKLRAGIKVCAIKAPG 310          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.066e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C LD
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDN-ELEVVEGMKLDRGYISPYFITNQKNQKCELD 247          

HSP 2 Score: 38.1206 bits (87), Expect = 1.066e-26
Identity = 15/34 (44.12%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  576 VLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +LI++ED+E++ LA+L+LN +    K C I  PG
Sbjct:  278 LLIVSEDVESEALATLILNKLRAGIKVCAIKAPG 311          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.066e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C LD
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFN-ELEVVEGMKLDRGYISPYFITNQKNQKCELD 247          

HSP 2 Score: 39.6614 bits (91), Expect = 1.066e-26
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  576 VLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +LI++ED+E+D LA+L+LN +    K C I  PG
Sbjct:  278 LLIVSEDVESDALATLILNKLRAGIKVCAIKAPG 311          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.746e-26
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D R+G ++A+D +V NL S A+ I++ E+IA  GT +ANGDR IGELIAKA E      +  + D KT  + EL++  GM +DRGY+SPYFITN KT++C L+
Sbjct:  146 DLRRGIKLAVDTVVTNLQSRARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNPKTQKCELE 247          

HSP 2 Score: 39.6614 bits (91), Expect = 6.746e-26
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  576 VLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +LI+AED+E+D LA+L+LN +    K C +  PG
Sbjct:  278 LLIVAEDVESDALATLILNKLRANIKVCAVKAPG 311          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 58/126 (46.03%), Postives = 82/126 (65.08%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQ----LEDIMAQMY*SLLKILKM 606
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN KT++C L+     + D       +++K+L+M
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTNMHAVVKVLEM 272          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQ----LEDIMAQMY*SLLKILKM 606
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN K ++C L+     + D       +++K+L+M
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTNMHAVVKVLEM 272          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-19
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLDQ 552
            D ++G   A++A+V  L   A+ +T  ++IA  GT +ANGD+ IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYFITN +     LD+
Sbjct:  115 DLKRGIDKAVEAIVEELKKNARKVTKNDEIAQVGTISANGDQEIGRFLAQAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFITNQEKMRVELDE 217          

HSP 2 Score: 35.8094 bits (81), Expect = 1.307e-19
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.207e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIA--KAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D R+G ++A+D +V  L S A+ I++ E+IA  GT +ANGDR   EL+   KA E      +  + D KT  + EL++  GM +DRGY+SPYFITN K ++C L+
Sbjct:  149 DLRRGIKLAVDTVVTKLKSRARMISTSEEIAQVGTISANGDR---ELVTDCKAMESVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNQKNQKCELE 249          

HSP 2 Score: 36.5798 bits (83), Expect = 2.207e-19
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  576 VLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +LI+A D+E+D LA L+LN +    K C +  PG
Sbjct:  280 LLIVAADLESDALAVLILNKLRAGIKVCAVKAPG 313          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.210e-19
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G   A+  +V  L + ++ I+S ++IA  GT +AN D  IGELIA+A EK  G +  +  +       EL++  GM  DRGYLSPYF+TN  T E  LD
Sbjct:  115 DLKRGIDRAVKEVVAELKAISRSISSKKEIAQVGTISANNDPEIGELIAEAMEK-VGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYFVTNSDTMEAELD 216          

HSP 2 Score: 39.6614 bits (91), Expect = 2.210e-19
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAEDIE + LA+LV+N +    K C +  PG
Sbjct:  243 SGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPG 280          
BLAST of FC868895 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-19
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  241 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECRLD 549
            D ++G  +A+DA+VG L + A+ I++  +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L+
Sbjct:  115 DLKRGIDLAVDAVVGELKANARKISNNSEIAQVGTISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNQDKMRVELE 216          

HSP 2 Score: 35.4242 bits (80), Expect = 2.210e-19
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  564 NGTDVLIIAEDIENDLLASLVLNGVATATKACVINLPG 677
            +G  +LIIAED+E + LA+LV+N +    K   +  PG
Sbjct:  243 SGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPG 280          
The following BLAST results are available for this feature:
BLAST of FC868895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60A_ARATH4.833e-2754.37Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH61_CUCMA1.066e-2652.43Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH62_CUCMA1.066e-2652.43Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60B_ARATH6.746e-2650.49Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH61_MAIZE1.472e-2046.03Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_MAIZE5.593e-2045.24Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH602_MESSB1.307e-1940.3860 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH60_BRANA2.207e-1943.81Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60_CHLCH2.210e-1941.7560 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH602_RHIEC2.210e-1940.7860 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionC31006B10EF AbioticL1 Citrus clementina cDNA clone C31006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868895 ID=FC868895; Name=FC868895; organism=Citrus clementina; type=EST; length=684bp
GGTTCTGTTTTGGTCAATCGAATTCCTCTGTCCTTTCTGCGCAACAAAAT
CACAAACGATGTTGCGCCATGCCTCTAACCTCGCCTCCAAAGTCAGGTTG
CTTGATAACAATTTTCAGCCGGTTCATTTAACTCGGAGCAGACAGTATAC
CGCGGCGGAAGTCACTAAAAGATTTTTGGATTGCACCAATTCTAAAGTTA
AAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGAC
AAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCACA
GCACAACCCATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTGC
AGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAGA
AAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACCC
AGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATTT
GTCACCTTACTTCATCACCAATCATAAGACGAAAGAATGTAGATTGGACC
AGTTAGAAGATATAATGGCACAGATGTACTGATCATTGCTGAAGATATTG
AAAATGATCTCCTAGCAAGTCTTGTCTTAAATGGAGTGGCTACAGCAACC
AAGGCTTGTGTCATAAACCTCCCTGGATTGGAGA
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