FC868905

Overview
NameFC868905
Unique NameFC868905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9416 contig Ccv1_Contig9416:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVAHVAP 657
            +P +GES+T+GT+ ++LK  GD VELDEP+ ++ TDKV  ++ SP AGV+ +++A+E +TVE G ++AVI  + +     AP
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVIGDAKDAGEAAAP 88          

HSP 2 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  388 GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVAHVAP 657
            GGD    ++P +GES+T+GT+ ++LK  GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +  A  AP
Sbjct:  118 GGDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAADIGAAPAP 207          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVAHVAP 657
            +P +GES+T+GT+ ++LK  GD VELDEP+ ++ TDKV  ++ SP AGV+ +++A+E +TVE G ++AVI  + +     AP
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVIGDAKDAGEAAAP 88          

HSP 2 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  388 GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEGVAHVAP 657
            GGD    ++P +GES+T+GT+ ++LK  GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +  A  AP
Sbjct:  118 GGDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAADIGAAPAP 207          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV++EL+A EG+TVE G  IAV+   GEG
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELLANEGDTVEVGQAIAVV---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IAVI   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVI---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV+ E +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV+ E +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IAVI   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNLGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVI---GEG 78          
BLAST of FC868905 vs. ExPASy Swiss-Prot
Match: ODO2_STAAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=odhB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIXKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
The following BLAST results are available for this feature:
BLAST of FC868905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODO2_MYCTU2.241e-1545.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO2.241e-1545.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS13.823e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAB6.521e-1556.58Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES8.517e-1549.38Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ8.517e-1549.38Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW8.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS8.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAR8.517e-1556.58Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAN8.517e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC31006D02EF AbioticL1 Citrus clementina cDNA clone C31006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868905 ID=FC868905; Name=FC868905; organism=Citrus clementina; type=EST; length=658bp
GACAAAAACAATCATTCATTCAACCCTGTTGTGTTCGTCTGAAGACTCTC
TCAAAGAAAACGCAACTTGTTCTGTTCGATCAAGCAGGTACATACCTGAA
CAACGATGCTGGGTGTTATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCT
GCTTCGATTTTAGGGCATTCACTGCAGACAATGAGGCCTGCAATGTCTGT
ATCTAGAGTCTCATCTATTGCAGGAAAAGAGACGTTACTGCATTCAAGAG
GATTAGGGCATATCCGGAATTTCAGTCATTTAATTTTTCCAGGTTGCTCT
AAGGGTTGTCAACCATTAAGGGATGTAATTTCTAGCACCCAGAAAGCAAC
TAACATGCATCTGTGGAGCCATCCATTTTCTTCTGAAGGAGGGGATTTGG
TTGATGCTGTTGTCCCTTTTATGGGTGAATCCATAACCGATGGTACTTTG
GCAAAATTCTTGAAGGGTCCTGGTGATAGGGTGGAACTTGATGAACCAAT
TGCTCAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCGGAAG
CAGGTGTTATCAAAGAGCTTGTAGCCAAAGAAGGGGAGACTGTGGAACCA
GGTACCAAGATTGCTGTGATTTNCAAGTCTGGTGAAGGTGTAGCTCATGT
AGCTCCCT
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