FC868906

Overview
NameFC868906
Unique NameFC868906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868906_ssr227 microsatellite FC868906_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10360 contig Ccv1_Contig10360:10..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868906 vs. ExPASy Swiss-Prot
Match: GTOMC_ARATH (Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.118e-45
Identity = 97/172 (56.40%), Postives = 113/172 (65.70%), Query Frame = 1 
Query:  157 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EAPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFD 663
            +SSLLF   S S  +                    L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD  H+ AQ+RMIEE+LRFAGV+ E   K+ K VVDVGCGIGGSSRYLA KFGA+C GITLSPV                K SFQV DAL QPF DG+FD
Sbjct:   25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFD 196
The following BLAST results are available for this feature:
BLAST of FC868906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GTOMC_ARATH2.118e-4556.40Tocopherol O-methyltransferase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31006D03EF AbioticL1 Citrus clementina cDNA clone C31006D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868906 ID=FC868906; Name=FC868906; organism=Citrus clementina; type=EST; length=664bp
GATAGTTGCAAGCTCTTTACAGTGTGGACCCACCGCTCGCACTTCTTCAT
TCTTTCTGGAATAAAAAAAGAAAAAAGGCTCTCCGACATCCAATCAGAAA
TGTCCGCGTGTCTCCGCCCTTCCCTCCTCCCAGCCCCTCCTCCGGCTCCT
ACGTGGCGAAGTTCCCTGCTTTTTGGAGTGAGCTCTTTCTCGAGGAAGCT
AATAACTCGAGCGTCATCTACGACGTCGACGACGACGATGAGTGACGCTG
CCGCACGTGAGCTGAAAGAAGGAATAGCTGAGTTCTACGACGAGTCGTCT
AGTCTTTGGGAAGACATTTGGGGCGACCACATGCACCACGGATTCTACGA
GCCGGATTCCTCCGTCTCCGTCTCCGACCACCGCGCCGCCCAGGTCCGCA
TGATCGAAGAGACGCTCCGTTTCGCCGGCGTTTCCGAGGCCCCAACGAAG
AGGCCAAAGAATGTTGTGGATGTTGGCTGTGGGATAGGAGGCAGCTCTAG
ATACTTGGCTAAGAAATTTGGCGCTAAATGCCAAGGCATCACTCTCAGTC
CCGTCCAAGCACAGAGGGCTAATGCCCTTGCTGCTGCTCGAGGCTTAGCC
GATAAGGTTTCCTTTCAAGTTGGAGATGCTTTGCAGCAACCGTTTCCTGA
TGGGCAATTTGATC
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