FC868910

Overview
NameFC868910
Unique NameFC868910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14562 contig Ccv1_Contig14562:22..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868910 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.534e-52
Identity = 100/122 (81.97%), Postives = 112/122 (91.80%), Query Frame = 3 
Query:  171 MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 536
            MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDINEEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:    1 MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of FC868910 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 74/129 (57.36%), Postives = 105/129 (81.40%), Query Frame = 3 
Query:  171 MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 548
            MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++GDI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127
The following BLAST results are available for this feature:
BLAST of FC868910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH9.534e-5281.97Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH4.299e-3657.36Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionC31006D08EF AbioticL1 Citrus clementina cDNA clone C31006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868910 ID=FC868910; Name=FC868910; organism=Citrus clementina; type=EST; length=691bp
AGCCTTTGTGTATAATTCCGAGCGGCATTTCATCGCCGTCTCCTTTGTCC
CACCAGCTTGTCTGCTGCTGCAAGCGAATTCCTGCTTCACACCAAAGAAA
CACAATTGAGAGTATCGCGAGGCTGAGCTTAATTTATCTAGAAGCGAAGA
AAGGCTGTGATCTTTGAGTCATGAATTCTAGAAGGGACTACCGTAATAGT
AAAGTCGCACTTTTTGATGGCATTGAGGAGGGTGGCATCAGAGCCTCCTC
TTCTTACTCCCATGAAATTGACGAGCATGATAATGAAAGAGCATTGGAAG
GATTGCAAGATAGAGTCAATCTTCTGAAGAGACTGTCAGGTGATATAAAT
GAAGAGGTTGACACACACAATCGCATGTTGGAACGGATGGGAAATGATAT
GGATGCTTCAAGAGGAGTCCTATCAGGAACCATGGATAAGTTTAAAATGG
TTTTCGAGACCAAATCGAGCAGGAGAATGTTTACCCTTGTTGCATCATTT
GTGGTCATTTTCCTAATTGTATACTATCTCACTAGGTAAATGATCTATGA
TGTATTTGATAACGCCAGCAGCTTTGTGTTAGTATTGGGATGACCCCTTT
TTATGTGGTTATGTAATCAATCTTGCATGTTGCATGTAAGGAACTCGTTT
GTGGTTGTATAAAGAGTTTGTATTCTATGGAATTGTCATTA
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