FC868912

Overview
NameFC868912
Unique NameFC868912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868912_ssr41 microsatellite FC868912_ssr41:41..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9497 contig Ccv1_Contig9497:47..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.687e-46
Identity = 98/186 (52.69%), Postives = 130/186 (69.89%), Query Frame = 3
Query:  126 SNSKFCSSNFLMEGELPKLK--DGALYNKSSILLELSASDDISAYKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEE 671
            + S  CSS  L E E  + K  DGA    ++ LLE +A DD+S++KREIEE    ++DE  FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVDA GNKPVDL+    +   +  ++A+E+LL G H ++ EEEE
Sbjct:    4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE 186          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.556e-44
Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 3
Query:  132 SKFCSSNFLMEGELPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKG-------DHTIFEEEELVN 680
            S  CSS  L E E  + ++     ++ +LLE +A DD+ ++KRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VDA GN+P+D+     +     R++A+ELLL+G       D  + EE ++V+
Sbjct:    7 SNLCSSRTLTEIESRQKEE-----ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVS 191          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41
Identity = 85/154 (55.19%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  204 KSSILLELSASDDISAYKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 662
            K S+LLE SA +D+S +K  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FGS  V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  DAYGNKP D+I   +     +R + +E LLKG+  + E
Sbjct:   10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNE 163          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = 3
Query:  216 LLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP 686
            LLEL+A++D+   +  IE     VDE   WYGR+ GSK M  + RTP+M+AA +GS+ V+K ++     DVNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +DA G +  D+I V  K  L   K  ++ LL  D +   E  L    N+P
Sbjct:   48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVP 205          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 61/163 (37.42%), Postives = 106/163 (65.03%), Query Frame = 3
Query:  180 LKDGALYNKS-SILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 665
            + D A +  S S LLE +A +D+  ++R++ +    +++   WY R+   ++M  E+RTP+M+A+++GS+ V+K+++   + ++N +CG D  TALHCA +G + +S +VVKLLLS  AD N  DA+GN+PVD++ V+  +P    +  +E +LK D  I E+
Sbjct:   29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISED 188          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 68/142 (47.89%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  216 LLELSASDDISAYKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLL 638
            LLEL+A DD    +R +E       DE   WYGRR        E RTP+M+AA +GS+AVL+ ++    VDVNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  DA G +P D+I V  K  +   K A++ LL
Sbjct:   70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLL 204          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 3
Query:  171 LPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLK 641
            LP+ +  A    +S+LLEL+A+DD++A +R +EE+   +     WYG    G  ++G E RT  M+AA++GS  VL YV+     +  RA  +DG T LH A AGGA ++    +LLL+A A V+ + A G +  DL+P A      + ++AI LLLK
Sbjct:   13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLK 165          
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  189 GALYNKSSILLELSASDDISAYKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSP 602
            G   ++ + LLEL+A+DD+   +  + E G +     D    WYGR        +E RTP+M+AA +GS  V+  ++  G  VDVNR  G+DG TALHCA +GG++++  VVKLLL+A AD    D+ G  P D+I     SP
Sbjct:   18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155          
The following BLAST results are available for this feature:
BLAST of FC868912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H29_ARATH2.687e-4652.69Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH9.556e-4447.89Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH2.602e-4155.19Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H30_ARATH7.853e-3045.00Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH6.223e-2737.42Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H24_ORYSJ1.811e-2647.89Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H33_ORYSJ3.196e-2339.24Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H50_ORYSJ8.703e-2140.56Zinc finger CCCH domain-containing protein 50 OS=O... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31006D10EF AbioticL1 Citrus clementina cDNA clone C31006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868912 ID=FC868912; Name=FC868912; organism=Citrus clementina; type=EST; length=689bp
GACTTCACACAAGTCATTTCTCATCAGCTGAGTCTTTTTGTTCTTCTTCT
TCTATAAAATTAACACTCTTAAAGAATCAAAGAATCTTATCAACTTATCA
AGCTCTACTTATAGGAATTGGGTATTCAAATAGTAAATTTTGCAGCTCAA
ATTTCCTCATGGAAGGTGAACTCCCCAAGCTGAAAGATGGTGCCTTGTAT
AACAAATCCTCAATTTTGCTGGAATTGTCAGCTTCTGACGATATCTCTGC
CTATAAGAGAGAAATAGAAGAGAAGGGTTTTGATGTTGATGAGCCCAGCT
TCTGGTATGGTAGGAGAATTGGGTCAAAAAAGATGGGATTTGAAGAGAGG
ACCCCAATCATGATTGCTGCCATGTTTGGAAGTGTTGCGGTATTGAAATA
TGTTATTGAAACAGGCAAAGTTGATGTGAATAGGGCCTGTGGATCTGATG
GTTTCACTGCCCTTCACTGTGCTGTTGCTGGTGGTGCCAAATCTTCCTTT
GAGGTGGTCAAGCTCTTACTCAGTGCATCTGCTGATGTTAACTGCGTTGA
TGCGTATGGGAATAAGCCAGTCGATCTCATTCCAGTTGCTATGAAATCAC
CACTCCATTCAAGAAAAAGGGCAATAGAGTTATTGTTGAAAGGCGATCAT
ACTATTTTTGAAGAGGAAGAATTGGTGAATATCCCTGTG
back to top