FC868912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.687e-46 Identity = 98/186 (52.69%), Postives = 130/186 (69.89%), Query Frame = 3 Query: 126 SNSKFCSSNFLMEGELPKLK--DGALYNKSSILLELSASDDISAYKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEE 671 + S CSS L E E + K DGA ++ LLE +A DD+S++KREIEE ++DE FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C + TALHCAV+G + S E++K+LL ASA NCVDA GNKPVDL+ + + ++A+E+LL G H ++ EEEE Sbjct: 4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE 186
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 9.556e-44 Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 3 Query: 132 SKFCSSNFLMEGELPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKG-------DHTIFEEEELVN 680 S CSS L E E + ++ ++ +LLE +A DD+ ++KRE+EEKG D+DE WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG + T LHCAVAG + + EV+ +LL ASA VN VDA GN+P+D+ + R++A+ELLL+G D + EE ++V+ Sbjct: 7 SNLCSSRTLTEIESRQKEE-----ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVS 191
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41 Identity = 85/154 (55.19%), Postives = 112/154 (72.73%), Query Frame = 3 Query: 204 KSSILLELSASDDISAYKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 662 K S+LLE SA +D+S +K +EE+G + +D WYGRR+GSKKMGFEERTP+MIAA+FGS V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL SA+ + DAYGNKP D+I + +R + +E LLKG+ + E Sbjct: 10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNE 163
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30 Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = 3 Query: 216 LLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP 686 LLEL+A++D+ + IE VDE WYGR+ GSK M + RTP+M+AA +GS+ V+K ++ DVNRACG+D TALHCA +GGA ++ +VVKLLL+A AD+N +DA G + D+I V K L K ++ LL D + E L N+P Sbjct: 48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVP 205
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27 Identity = 61/163 (37.42%), Postives = 106/163 (65.03%), Query Frame = 3 Query: 180 LKDGALYNKS-SILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 665 + D A + S S LLE +A +D+ ++R++ + +++ WY R+ ++M E+RTP+M+A+++GS+ V+K+++ + ++N +CG D TALHCA +G + +S +VVKLLLS AD N DA+GN+PVD++ V+ +P + +E +LK D I E+ Sbjct: 29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISED 188
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26 Identity = 68/142 (47.89%), Postives = 87/142 (61.27%), Query Frame = 3 Query: 216 LLELSASDDISAYKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLL 638 LLEL+A DD +R +E DE WYGRR E RTP+M+AA +GS+AVL+ ++ VDVNR CGSDG TALHCA +GG+ S E VKLLL+A AD + DA G +P D+I V K + K A++ LL Sbjct: 70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLL 204
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23 Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 3 Query: 171 LPKLKDGALYNKSSILLELSASDDISAYKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLK 641 LP+ + A +S+LLEL+A+DD++A +R +EE+ + WYG G ++G E RT M+AA++GS VL YV+ + RA +DG T LH A AGGA ++ +LLL+A A V+ + A G + DL+P A + ++AI LLLK Sbjct: 13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLK 165
BLAST of FC868912 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21 Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 3 Query: 189 GALYNKSSILLELSASDDISAYKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSP 602 G ++ + LLEL+A+DD+ + + E G + D WYGR +E RTP+M+AA +GS V+ ++ G VDVNR G+DG TALHCA +GG++++ VVKLLL+A AD D+ G P D+I SP Sbjct: 18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155 The following BLAST results are available for this feature:
BLAST of FC868912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868912 ID=FC868912; Name=FC868912; organism=Citrus clementina; type=EST; length=689bpback to top |