FC868915

Overview
NameFC868915
Unique NameFC868915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868915_ssr231 microsatellite FC868915_ssr231:231..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10360 contig Ccv1_Contig10360:6..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868915 vs. ExPASy Swiss-Prot
Match: GTOMC_ARATH (Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.919e-41
Identity = 91/164 (55.49%), Postives = 106/164 (64.63%), Query Frame = 2 
Query:  161 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EAPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 643
            +SSLLF   S S  +                    L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD  H+ AQ+RMIEE+LRFAGV+ E   K+ K VVDVGCGIGGSSRYLA KFGA+C GITLSPV                K SFQV DAL Q
Sbjct:   25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQ 188
The following BLAST results are available for this feature:
BLAST of FC868915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GTOMC_ARATH3.919e-4155.49Tocopherol O-methyltransferase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31006E02EF AbioticL1 Citrus clementina cDNA clone C31006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868915 ID=FC868915; Name=FC868915; organism=Citrus clementina; type=EST; length=643bp
TTGCGATAGTTGTAAGCTCCTTACAGTGTGTACGCACCGCTCGCACTTCT
TCATTCTTTCTGGAATAAAAAAAGAAAAAAGGCTCTCCGACATCCAATCA
GAAATGTCCGCGTGTCTCCGCCCTTCCCTCCTCCCAGCCCCTCCTCCGGC
TCCTACGTGGCGAAGTTCCCTGCTTTTTGGAGTGAGCTCTTTCTCGAGGA
AGCTAATAACTCGAGCGTCATCTACGACGTCGACGACGACGATGAGTGAC
GCTGCCGCACGTGAGCTGAAAGAAGGAATAGCTGAGTTCTACGACGAGTC
GTCTAGTCTTTGGGAAGACATTTGGGGCGACCACATGCACCACGGATTCT
ACGAGCCGGATTCCTCCGTCTCCGTCTCCGACCACCGCGCCGCCCAGGTC
CGCATGATCGAAGAGACGCTCCGTTTCGCCGGCGTTTCCGAGGCCCCAAC
GAAGAGGCCAAAGAATGTTGTGGATGTTGGCTGTGGGATAGGAGGCAGCT
CTAGATACTTGGCTAAGAAATTTGGCGCTAAATGCCAAGGCATCACTCTC
AGTCCCGTCCAAGCACAGAGGGCTAATGCCCTTGCTGCTGCTCGAGGCTT
AGCCGATAAGGTTTCCTTTCAAGTTGGAGATGCTTTGCAGCAA
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