FC868917

Overview
NameFC868917
Unique NameFC868917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868917_ssr79 microsatellite FC868917_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:10..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.028e-87
Identity = 151/188 (80.32%), Postives = 171/188 (90.96%), Query Frame = 3
Query:  108 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYI
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYI 202          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.051e-84
Identity = 151/188 (80.32%), Postives = 169/188 (89.89%), Query Frame = 3
Query:  108 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYI
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYI 199          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.915e-78
Identity = 141/190 (74.21%), Postives = 159/190 (83.68%), Query Frame = 3
Query:  111 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYI
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYI 203          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.693e-42
Identity = 92/169 (54.44%), Postives = 108/169 (63.91%), Query Frame = 3
Query:  177 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIG 662
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVG 196          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 55/179 (30.73%), Postives = 79/179 (44.13%), Query Frame = 3
Query:  150 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            + ++ G G   T+ K    ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++
Sbjct:   32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWV 159          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 55/176 (31.25%), Postives = 73/176 (41.48%), Query Frame = 3
Query:  159 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            RF       APKKS           W P  K+      PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  +L+  ++L++G++
Sbjct:   41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWV 154          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 48/151 (31.79%), Postives = 65/151 (43.05%), Query Frame = 3
Query:  234 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI 668
            W P  +       PEWLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++
Sbjct:   55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWV 154          
BLAST of FC868917 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = 3
Query:  234 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYI 668
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFV 153          
The following BLAST results are available for this feature:
BLAST of FC868917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CB4A_ARATH5.028e-8780.32Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.051e-8480.32Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH1.915e-7874.21Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.693e-4254.44Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL3.556e-1630.73Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC7.414e-1431.25Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC2.817e-1331.79Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB11_SOLLC2.637e-1132.43Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC31006E04EF AbioticL1 Citrus clementina cDNA clone C31006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868917 ID=FC868917; Name=FC868917; organism=Citrus clementina; type=EST; length=668bp
GGATCACTTAACAAGTTACAATTTCAATCAACACTACACACCCCACCGTA
AGTTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATC
ATCTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTA
TCCAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCG
AAACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAA
GGCACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACC
CGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCG
TTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAG
GATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAG
TCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGG
GCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGAT
TACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACC
TGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTT
TTGGTAATTGGCTACATT
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