FC868919

Overview
NameFC868919
Unique NameFC868919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868919_ssr284 microsatellite FC868919_ssr284:284..295. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9419 contig Ccv1_Contig9419:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868919 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:  343 CFLSGFVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSH-WETCFDKL 723
            C  + F    R +    N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+  + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL
Sbjct:   58 CGFASFCDKHRAATH--NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKVLEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKL 182
The following BLAST results are available for this feature:
BLAST of FC868919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YVRI_CAEEL5.260e-1133.33GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionC31006E06EF AbioticL1 Citrus clementina cDNA clone C31006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868919 ID=FC868919; Name=FC868919; organism=Citrus clementina; type=EST; length=728bp
CTGCCGGGGGGTCTTTCTATGGTAGCACAATCCGGGAAGAAAGTATAATT
AAAAAAAAAAAAATCTTTTTTATAAGACGAAACACGTCACGAGGAGATAA
ATAAATTCATTTGTCCACCTGTAAGGTGTATAATTATCGTTCGAGAGAAA
AACTACCACTGACAATTAATGTCTCCGTGTTGCTTTCATGCGCGAAAATG
TCGTAACTAAACCATTCTCGCACTTTTTCACTTAAGAAGAACGGGGAAAA
AAAAATATCCCTAATTTACGGATTCATCTATGGCTTCTTCTTCTTATTCC
TCAACTAAAGCCTTATCTCTTGTCTTTTACATTACCTTGTTCTGCTTCTT
GTCTGGCTTTGTTTCAGCTTCTAGAACTTCACCTTCAGATGTCAACAGTA
AAGTCAAGTTAGGTCTGTACTACGAGTCTTTGTGTCCATACAGTGCCAAT
TTCATTATCAATTACTTGGTTAAAATCTTTGAAGATGTTGATCTGTTATC
CATCGTTGATCTCCATCTTTCTCCCTGGGGGAATGCCAAAATCAGAGCCA
ACAGCACCTTTGATTGCCAGCATGGCCCTTCTGAATGCTTGCTGAACACT
GTGGAAGCTTGTGCGATTGATAGTTGGCCTGAATTGAACAAGCATTTCCC
GTTTATCTACTGCATTGAGAGTTTAGTGTACGAGCATAAGTATTCTCACT
GGGAAACATGCTTTGATAAATTGGACTG
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