FC868921

Overview
NameFC868921
Unique NameFC868921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9346 contig Ccv1_Contig9346:16..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 4.211e-98
Identity = 173/199 (86.93%), Postives = 178/199 (89.45%), Query Frame = 1
Query:   58 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 654
            MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIGDKCDGVIGQLTEDWGE LF+ALSR GGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGV                 RRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY+DLYQ
Sbjct:    1 MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQ 199          

HSP 2 Score: 26.1794 bits (56), Expect = 4.211e-98
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  644 IFTSYTLGKFVTAYGQFL 697
            ++ S  L KFVTAYG+FL
Sbjct:  197 LYQSTRLEKFVTAYGEFL 214          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  244 CDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 645
            CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V NTPGV                 RR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF M ++YYD
Sbjct:   46 CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVAR-RAKGFGMRILYYD 177          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  319 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            K  +  AVGY+N+D+  A K GI V NTPGV                 RRIVEAD F+R+G +     GW P +F+G  LKG+T+G++G GRIG A A+   +GF M +IYY
Sbjct:   69 KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAK-RAKGFGMKIIYY 179          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 61/185 (32.97%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  100 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            K +V  T+ +P    IN+L E++  VE+  +++ I   E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V NTP V                 R +V+ D+F+R+G +      W P  F+G  L G+T+G++G GRIG A AR   +GF M ++YY
Sbjct:    2 KPKVFITRAIP-ENGINML-EEEFEVEVWEEEREIPR-EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIAR-RAKGFNMRILYY 179          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 60/184 (32.61%), Postives = 92/184 (50.00%), Query Frame = 1
Query:  100 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 648
            K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+     +  A      K  S  +VG++++D+  A K GI V +TPGV                 RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + ++YYD+
Sbjct:    5 KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKIDAEVMDAAPNL--KVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKILYYDI 180          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 61/184 (33.15%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  100 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 639
            K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E     +F A  R   K  +N AVGY+N+D+  A K G+ + NTP V                 RR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M ++Y
Sbjct:    2 KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERIDAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIAR-RAKGFGMRILY 178          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  154 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N AVGY+N+DV  A + GI V NTP V                 RR++EAD F R+G +      W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY
Sbjct:   18 MLKEHFEVEVWPEEREIPR-EVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYY 179          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  154 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            ++ +   VE+  +++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+NVDV  A + GI V NTP V                 RR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M ++YY
Sbjct:   18 MLREHFEVEVWPEEREIPR-EVLLEKVRD-VDALVTMLSERIDGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVAR-RAKGFGMRILYY 179          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  154 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            ++E++  VE+   ++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+N+DV  A K GI V NTPGV                 R +V+ D+F R+G +      W P  F+G  + G+T+G+IG GRIG A A+    GF M ++YY
Sbjct:   19 MLEKEFEVEVWEDEREIPR-EILLEKVKD-VDALVTMLSERIDREVFERAPRL--RIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAK-RARGFDMRILYY 180          
BLAST of FC868921 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  154 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRTGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 642
            ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +      W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY
Sbjct:   18 MLEDEFEVEVWGDEKEI--PREILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNMRILYY 179          
The following BLAST results are available for this feature:
BLAST of FC868921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DHGY_CUCSA4.211e-9886.93Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
GYAR_KORCO7.074e-1837.78Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_THELI9.239e-1844.64Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_PYRFU4.585e-1732.97Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THEPD3.882e-1632.61Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_THEON3.882e-1633.15Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRKO5.070e-1632.93Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_THEGJ8.648e-1633.53Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_PYRAB8.648e-1632.93Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_PYRHO1.927e-1531.14Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC31006E08EF AbioticL1 Citrus clementina cDNA clone C31006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868921 ID=FC868921; Name=FC868921; organism=Citrus clementina; type=EST; length=697bp
TTCAAGCACACGCTCTGTTTTTGGCACTTGGAACTTGAAACTGCCAACTT
AGCTTCAATGGCGAAGCCAGTTTCCATTGAAGTGTGGAACCCAAATGGAA
AATACAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGGATCAAT
CTCTTAATCGAACAAGATTGCCGTGTTGAAATATGCACCCAGAAGAAAAC
TATACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGTGCGATG
GAGTCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTTGCTGCA
CTGAGTAGAACAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGGTTACAA
CAATGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTGGAAACA
CTCCTGGAGTACTTACTGAAACAACAGCAGAGTTAGCAGCTTCGCTCTCT
CTAGCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAGAGCTGG
CTTATACGATGGATGGCTTCCAAATCTATTCGTCGGGAACTTGCTCAAGG
GACAGACTGTCGGTGTGATTGGAGCTGGTCGTATCGGATCTGCCTATGCT
AGAATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGATCTTTA
CCAGCTACACGCTTGGAAAGTTTGTCACAGCTTATGGTCAGTTTCTA
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