FC868922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 4.791e-67 Identity = 136/231 (58.87%), Postives = 166/231 (71.86%), Query Frame = 2 Query: 29 SSLRPSEPIMLVKPSLSSLFA---------PRLSRANAQAQQPRFISTSRACXXXXXXXXXXXXXXXRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 +SL+ + +L KPS+S F P+ S + + P S+S + RR+ + Q+A +SLS+S PA+++E LS WERV++P+DPGVVLLDIAFVPD+ + GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGKEGWI+GKPAILL+T+DAGE+W+RIPLSSQLPGDMV+IKAT KSAEMVTDEGAIY+T Sbjct: 2 ASLQLCDGYLLFKPSVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLS--------------FSRRELLYQSAAVSLSLSSIVG------PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVT 212
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 1.541e-65 Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 2 Query: 140 STSRACXXXXXXXXXXXXXXXRRQFVSQTATLSLSISLAATTGLYEQPAKSEE--ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 S+ R C RR+F++ TAT S + ++ A++++ +LS WERV +P+DPGVVLLDIAFVPDD +HGFLLGTRQT+LETK+GG TW PRSIPSAE+EDFNYRFNS+SF GKEGWI+GKPAILLHTSDAG+SWERIPLS+QLPG+MVYIKATG +SAEMVTDEGAIY+T Sbjct: 17 SSRRRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYVT 203
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_CYAPA (Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36 Identity = 78/128 (60.94%), Postives = 88/128 (68.75%), Query Frame = 2 Query: 311 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 WE+ IP++ +LLDI FVPD G+LLGTR TL ET D GKTW RS+ ED YR NSISF GKEGW+ GKPAILLHT+D G SW RIPLS+QLPGD I A G AE+ TD GAIY T Sbjct: 33 WEQ--IPLNTDEILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSL---NLEDDKYRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELATDIGAIYRT 155
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34 Identity = 69/145 (47.59%), Postives = 100/145 (68.97%), Query Frame = 2 Query: 263 TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 T LY P + ++W +V +PVD VL DI F + HG+L+G++ T LET DGG TW PR+ + + +E+ YRF +ISF+G+EGW++GKPAI+L+T D G++W R+P+S +LPG+ IKA G +SAE+ T GAIY+T Sbjct: 57 TSLY--PKFTHANTTSWTKVDLPVDS--VLFDIEFTDPECKHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIILYTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVT 197
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31 Identity = 69/140 (49.29%), Postives = 96/140 (68.57%), Query Frame = 2 Query: 281 PAKSEEAL--SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 PA + AL + WE + +P +LD++F+ D +HG+L+G TL+ET+DGG+TW PR++ + YRFNS+SF+G EGWIVG+P I+LHT+D G+SW +IPL +LPG IKA G SAEM+T+ GAIY T Sbjct: 35 PALAIPALDYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT 167
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31 Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2 Query: 236 SLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 +L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+ TLLET DGG W P ++ +D YRF+S+SF GKEGWIVG+P++LLHT+D G SW RIPLS +LPG+ + I+A G AEM TD GAIY T Sbjct: 12 TLLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSSATLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKT 155
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31 Identity = 74/148 (50.00%), Postives = 92/148 (62.16%), Query Frame = 2 Query: 251 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 L G + P SE + W+ + + D +IAF DDL HG+L+GT++TL ET DGGKTWA R I +E++ F +SF G+EGWI G+P+ILLHT D GE W RI LSSQLPG I A G +AEMVTD GAIY T Sbjct: 21 LVLCIGCVQAPTISE---NPWQEIDLNTDS--TFANIAFT-DDLQHGWLVGTKETLFETTDGGKTWAERVIDLGDEKE---SFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKT 159
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31 Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 2 Query: 236 SLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 +L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+ TLLET DGG W P ++ +D YRF+S+SF GKEGWI G+P++LLHT+D G SW RIPLS +LPG+ + I+A G AEM TD GAIY T Sbjct: 12 ALLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSNATLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKT 155
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29 Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 2 Query: 299 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 A + W+ + + D DIAF +D NHG+L+GT++T+ ET DGG TW + I EE+ F+++SF G EGWI GKP+ILLHT+D G++W RIPLS +LPG I A G ++AEM+TD GAIY T Sbjct: 36 AFNPWQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEKA---SFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMITDLGAIYKT 161
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNJA (Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0848 PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27 Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 2 Query: 245 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694 + LAA + L + + W++V +P +LLDIAF + +HG+L+G + TLLE++DGG W R + + E E + +SISF G EGW+VG+P ILLHT + G W I LS QLPG+ + I+A G +AEMVT+ GAIY T Sbjct: 11 VLLAAFSLLLMAARMPDMKVVPWQQVEVPTQN--ILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAY---LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVTNVGAIYRT 155 The following BLAST results are available for this feature:
BLAST of FC868922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868922 ID=FC868922; Name=FC868922; organism=Citrus clementina; type=EST; length=694bpback to top |