FC868922

Overview
NameFC868922
Unique NameFC868922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.791e-67
Identity = 136/231 (58.87%), Postives = 166/231 (71.86%), Query Frame = 2
Query:   29 SSLRPSEPIMLVKPSLSSLFA---------PRLSRANAQAQQPRFISTSRACXXXXXXXXXXXXXXXRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            +SL+  +  +L KPS+S  F          P+ S +   +  P   S+S +                RR+ + Q+A +SLS+S          PA+++E LS WERV++P+DPGVVLLDIAFVPD+ + GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGKEGWI+GKPAILL+T+DAGE+W+RIPLSSQLPGDMV+IKAT  KSAEMVTDEGAIY+T
Sbjct:    2 ASLQLCDGYLLFKPSVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLS--------------FSRRELLYQSAAVSLSLSSIVG------PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVT 212          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.541e-65
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 2
Query:  140 STSRACXXXXXXXXXXXXXXXRRQFVSQTATLSLSISLAATTGLYEQPAKSEE--ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            S+ R C               RR+F++ TAT S + ++          A++++  +LS WERV +P+DPGVVLLDIAFVPDD +HGFLLGTRQT+LETK+GG TW PRSIPSAE+EDFNYRFNS+SF GKEGWI+GKPAILLHTSDAG+SWERIPLS+QLPG+MVYIKATG +SAEMVTDEGAIY+T
Sbjct:   17 SSRRRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYVT 203          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_CYAPA (Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 78/128 (60.94%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  311 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            WE+  IP++   +LLDI FVPD    G+LLGTR TL ET D GKTW  RS+     ED  YR NSISF GKEGW+ GKPAILLHT+D G SW RIPLS+QLPGD   I A G   AE+ TD GAIY T
Sbjct:   33 WEQ--IPLNTDEILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSL---NLEDDKYRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELATDIGAIYRT 155          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 69/145 (47.59%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  263 TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            T LY  P  +    ++W +V +PVD   VL DI F   +  HG+L+G++ T LET DGG TW PR+  + + +E+  YRF +ISF+G+EGW++GKPAI+L+T D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIY+T
Sbjct:   57 TSLY--PKFTHANTTSWTKVDLPVDS--VLFDIEFTDPECKHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIILYTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVT 197          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 69/140 (49.29%), Postives = 96/140 (68.57%), Query Frame = 2
Query:  281 PAKSEEAL--SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            PA +  AL  + WE + +P      +LD++F+  D +HG+L+G   TL+ET+DGG+TW PR++     +   YRFNS+SF+G EGWIVG+P I+LHT+D G+SW +IPL  +LPG    IKA G  SAEM+T+ GAIY T
Sbjct:   35 PALAIPALDYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT 167          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  236 SLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            +L + L    G  + P+ S    + W  V +P +    LLDIAF  ++  HGFL+G+  TLLET DGG  W P ++     +D  YRF+S+SF GKEGWIVG+P++LLHT+D G SW RIPLS +LPG+ + I+A G   AEM TD GAIY T
Sbjct:   12 TLLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSSATLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKT 155          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 74/148 (50.00%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  251 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            L    G  + P  SE   + W+ + +  D      +IAF  DDL HG+L+GT++TL ET DGGKTWA R I   +E++    F  +SF G+EGWI G+P+ILLHT D GE W RI LSSQLPG    I A G  +AEMVTD GAIY T
Sbjct:   21 LVLCIGCVQAPTISE---NPWQEIDLNTDS--TFANIAFT-DDLQHGWLVGTKETLFETTDGGKTWAERVIDLGDEKE---SFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKT 159          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  236 SLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            +L + L    G  + P+ S    + W  V +P +    LLDIAF  ++  HGFL+G+  TLLET DGG  W P ++     +D  YRF+S+SF GKEGWI G+P++LLHT+D G SW RIPLS +LPG+ + I+A G   AEM TD GAIY T
Sbjct:   12 ALLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSNATLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKT 155          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 2
Query:  299 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            A + W+ + +  D      DIAF  +D NHG+L+GT++T+ ET DGG TW  + I   EE+     F+++SF G EGWI GKP+ILLHT+D G++W RIPLS +LPG    I A G ++AEM+TD GAIY T
Sbjct:   36 AFNPWQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEKA---SFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMITDLGAIYKT 161          
BLAST of FC868922 vs. ExPASy Swiss-Prot
Match: YC48L_SYNJA (Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0848 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  245 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMVYIKATGRKSAEMVTDEGAIYIT 694
            + LAA + L       +  +  W++V +P     +LLDIAF   + +HG+L+G + TLLE++DGG  W  R + + E E +    +SISF G EGW+VG+P ILLHT + G  W  I LS QLPG+ + I+A G  +AEMVT+ GAIY T
Sbjct:   11 VLLAAFSLLLMAARMPDMKVVPWQQVEVPTQN--ILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAY---LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVTNVGAIYRT 155          
The following BLAST results are available for this feature:
BLAST of FC868922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
P2SAF_ARATH4.791e-6758.87Photosystem II stability/assembly factor HCF136, c... [more]
P2SAF_ORYSJ1.541e-6565.24Photosystem II stability/assembly factor HCF136, c... [more]
P2SAF_CYAPA5.712e-3660.94Photosystem II stability/assembly factor HCF136 OS... [more]
P2SAF_GUITH2.400e-3447.59Photosystem II stability/assembly factor HCF136, c... [more]
YC48L_THEEB1.456e-3149.29Ycf48-like protein OS=Thermosynechococcus elongatu... [more]
YC48L_ANASP3.243e-3148.37Ycf48-like protein OS=Anabaena sp. (strain PCC 712... [more]
YC48L_SYNP25.532e-3150.00Ycf48-like protein OS=Synechococcus sp. (strain AT... [more]
YC48L_ANAVT7.226e-3147.71Ycf48-like protein OS=Anabaena variabilis (strain ... [more]
YC48L_SYNY33.036e-2949.24Ycf48-like protein OS=Synechocystis sp. (strain PC... [more]
YC48L_SYNJA6.330e-2744.00Ycf48-like protein OS=Synechococcus sp. (strain JA... [more]

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Properties
Property NameValue
Genbank descriptionC31006E09EF AbioticL1 Citrus clementina cDNA clone C31006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868922 ID=FC868922; Name=FC868922; organism=Citrus clementina; type=EST; length=694bp
GAGAACAAAAGGGAGTATCGCAATGGGCAGCAGTCTACGACCGAGCGAAC
CGATAATGTTAGTAAAGCCATCGTTGAGCTCACTTTTCGCTCCTCGCCTT
AGCCGTGCAAACGCACAGGCACAGCAGCCTCGTTTCATTTCTACTTCTAG
AGCTTGTTCTCTTCCCAGTAGTGATTCTTCTTCGTCTTCATCGTCTCTCA
GTCGCAGACAATTCGTATCACAAACAGCCACGTTATCGCTATCAATCTCC
CTAGCCGCAACTACTGGTCTCTACGAACAGCCCGCAAAGTCAGAAGAAGC
ACTCTCCGCGTGGGAGAGAGTGTACATTCCTGTTGATCCCGGTGTTGTGC
TCCTCGACATCGCTTTCGTCCCCGATGACTTGAACCACGGCTTTCTCCTG
GGAACCAGGCAAACTCTCTTGGAGACCAAAGATGGTGGTAAAACTTGGGC
TCCACGTTCCATACCATCAGCTGAGGAGGAAGATTTCAACTATAGATTTA
ATTCCATTAGTTTCAAGGGCAAGGAAGGATGGATTGTTGGCAAACCTGCA
ATTTTGTTGCATACTTCTGATGCTGGAGAAAGCTGGGAAAGGATACCATT
AAGTTCTCAACTTCCTGGAGATATGGTTTACATAAAGGCCACCGGAAGAA
AGAGTGCTGAGATGGTGACCGATGAAGGTGCAATATATATTACA
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