FC868925

Overview
NameFC868925
Unique NameFC868925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig950 contig Ccv1_Contig950:9..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2A_ARATH (Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 114/136 (83.82%), Postives = 126/136 (92.65%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+LM QNQRF MFPIRYK +WEMYKKA+ASFWTAEEVDLS DVQ WE L DSEKHFISH+LAFFAASDGIVLENLAARFLND+Q+PEARAFYGFQIAMENIHSEMYSLLLET+ +DSKEK RLFNAIE IPC++++
Sbjct:   20 PLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKK 155          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.867e-54
Identity = 100/137 (72.99%), Postives = 117/137 (85.40%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLL-DSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L     RFCMFPI Y Q+WEMYKKA+ASFWTAEEVDLSQD + WE  L D E+HFI HVLAFFAASDGIVLENLA+RF++D+Q+ EARAFYGFQIA+ENIHSEMYSLLL+TY +D+KE+  LF AIE IPCVA++
Sbjct:    8 PLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKK 144          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_TOBAC (Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.084e-53
Identity = 97/136 (71.32%), Postives = 113/136 (83.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L     RFCMFPI+Y Q+WEMYKKA ASFWTAEEVDLS D +HWE L   E+HFI+HVLAFFAASDGIVLENLA RF+ ++Q+ EARAFYGFQIA+ENIHSEMYSLLLE+Y +DS EK RLF A+E  PCV ++
Sbjct:    8 PLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKK 143          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2B_ARATH (Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 99/137 (72.26%), Postives = 116/137 (84.67%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER-LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            PIL     RFCMFPI+Y Q+WEMYKKA+ASFWTAEEVDLSQD + WE  L + E+HFI HVLAFFAASDGIVLENL+ RF++D+QI EARAFYGFQIA+ENIHSEMYSLLL+TY +D+KE+  LF AIE IPCV ++
Sbjct:    8 PILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVTKK 144          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_RAT (Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.671e-52
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TY +DSKE+  LFNAIE +PCV ++
Sbjct:   72 PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKK 207          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_MESAU (Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TY +DSKE+  LFNAIE +PCV ++
Sbjct:   72 PLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKK 207          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_DANRE (Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.770e-52
Identity = 93/136 (68.38%), Postives = 114/136 (83.82%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E   RF +FPI+Y  +W+MYKKA+ASFWTAEEVDLS+D+QHW+ L D E++FISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TY +DSKE+  LFNAIE +PCV ++
Sbjct:   68 PLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKK 203          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.015e-51
Identity = 93/136 (68.38%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TY +D KE+  LFNAIE +PCV ++
Sbjct:   72 PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKK 207          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_MACFA (Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis GN=RRM2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.037e-51
Identity = 93/136 (68.38%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E++FISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMENIHSEMYSLL++TY +D KE+  LFNAIE +PCV ++
Sbjct:   71 PLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKK 206          
BLAST of FC868925 vs. ExPASy Swiss-Prot
Match: RIR2_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.037e-51
Identity = 93/136 (68.38%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYXQDSKEKHRLFNAIENIPCVAQR 694
            P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E++FISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMENIHSEMYSLL++TY +D KE+  LFNAIE +PCV ++
Sbjct:   71 PLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKK 206          
The following BLAST results are available for this feature:
BLAST of FC868925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RIR2A_ARATH1.156e-6383.82Ribonucleoside-diphosphate reductase small chain A... [more]
RIR2C_ARATH4.867e-5472.99Ribonucleoside-diphosphate reductase small chain C... [more]
RIR2_TOBAC1.084e-5371.32Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2B_ARATH4.120e-5372.26Putative ribonucleoside-diphosphate reductase smal... [more]
RIR2_RAT2.671e-5269.12Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MESAU3.488e-5269.12Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_DANRE7.770e-5268.38Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MOUSE1.015e-5168.38Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MACFA5.037e-5168.38Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_HUMAN5.037e-5168.38Ribonucleoside-diphosphate reductase subunit M2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31006F01EF AbioticL1 Citrus clementina cDNA clone C31006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868925 ID=FC868925; Name=FC868925; organism=Citrus clementina; type=EST; length=715bp
GAGAGACAAAGTCACTCAACAAATCGCNCAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTGGAGACATACATNCAAGACTCAAAAGAGAAGCATA
GATTGTTTAATGCAATTGAAAACATTCCCTGTGTGGCTCAGAGGCTAATG
GGCTCTGGATTGGAT
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