FC868930

Overview
NameFC868930
Unique NameFC868930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8171 contig Ccv1_Contig8171:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 4.389e-77
Identity = 143/192 (74.48%), Postives = 166/192 (86.46%), Query Frame = 3
Query:  150 MEPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD-IVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMGQ 722
            ME ++E S  MME + +NGGEE++  RPIISGE LD+EAYA+LY+GRTKI RL+FIA+HC    ++Q +ALRMAYDEIKKGENTQLFREVV KI  RLG  Y MD AWC++VDRRAEQ+K KLENEL++YRTNLIKESIRMGYNDFGDFYYA G LGDAF +Y+RTRDYCTT+KHIIHMCM+AILVSIEMGQ
Sbjct:    1 MERDEEASGPMME-MCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQ 191          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 59/155 (38.06%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  249 QLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIE 713
            + D+E Y + Y G TKI RL+FIAD+C    +++EA  MA  E++K  N +L+  ++ K  G L     +D  + +++ ++   + +KLE +LN  ++N++K+SIR   ND G+FYY  G   +A   ++RTRDYCTTSKH++ MC + I + ++
Sbjct:   29 EFDLETYINNYSGFTKIHRLIFIADNCK--QLEVEAYNMALKEVQKTPNLELYNTIINKSHGIL----ELDPVYIENLSKKNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVD 177          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNY------------------AMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710
            ++    LD+E YA+ Y G  +I RL FIADHC   ++++EAL+MA   +++  N  ++ E+ +K+      +                   A+D AW ++  ++A  + EKL+ +L  Y+ N IKESIR G++D GD Y   G L +A   Y R RDYCT++KH+I+MC++ I VS+
Sbjct:   36 VVENPSLDLEQYAASYSGLMRIERLQFIADHCP--TLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRSSLRELQNAPDAIPESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 210          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 70/201 (34.83%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  153 EPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKI---------------DGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710
            +P+D+Q N M +  Y            ++    LD+E YAS Y G  +I RL FIAD C    +++EAL+MA   +++  N  ++ ++ +K+               +G + P  A+D +W ++  ++A  + EKL+ +L  Y+ N IKESIR G++D GD Y   G L +A   Y R RDYCT++KH+I+MC++ I VS+
Sbjct:   22 DPQDDQQN-MPDVNY------------VVENPTLDLEQYASSYSGLMRIERLQFIADRCP--QLRVEALKMALSFVQRTFNVDVYEDIHRKLAEASREVQNAPDAVPEGSMEPP-ALDTSWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 206          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26
Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRL-----GPNYA---------MDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710
            ++    LD+E YA+ Y G  +I RL FIAD C    +++EAL+MA   +++  N  ++ E+ +K+          P+           +D AW ++  ++A  + EKL+ +L  Y+ N IKESIR G++D GD Y   G L +A   Y R RDYCT++KH+I+MC++ I VS+
Sbjct:   20 VVENPTLDLEQYAASYSGLMRIERLQFIADRCP--PLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 190          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26
Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRL-----GPNYA---------MDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710
            ++    LD+E YA+ Y G  +I RL FIAD C    +++EAL+MA   +++  N  ++ E+ +K+          P+           +D AW ++  ++A  + EKL+ +L  Y+ N IKESIR G++D GD Y   G L +A   Y R RDYCT++KH+I+MC++ I VS+
Sbjct:   20 VVENPTLDLEQYAASYSGLMRIERLQFIADRCP--PLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 190          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_DROME (COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22
Identity = 68/241 (28.22%), Postives = 114/241 (47.30%), Query Frame = 3
Query:  135 LSPNAMEPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKID-------------------GRLGPN------------------------------YAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710
            L  NA+EP         E+      E +   + ++    +D+E YA+ Y G  ++ RL+++AD C ++++  EAL+MA   ++   N  L++ + K++                    G   P                               +A D AW D+  ++A  + EKL+++L  Y++N IKESIR G++D  D Y + G L +A   Y R RDYCT+ KH+++MC++ I VSI
Sbjct:    9 LMQNAVEPMQVDIAPPNED-----NENNEEQQIVVENPSIDLEVYANQYAGIVRLHRLIYVADVCPVLAV--EALKMAITYVQTTYNVNLYQVLHKRLSDLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSI 242          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_EMENI (COP9 signalosome complex subunit 1 OS=Emericella nidulans GN=csnA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.891e-20
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  207 GEESARTRPIISGEQ---LDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNY---AMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMGQLL 728
            G  S    P++  E+    ++E+Y + Y GRT+  RL  I      +++  +AL+ A  E K G++   +   V+ +   + PN     +D  W +   +  +   ++LE+EL  Y+ NLIKESIRMG  + G  Y+  G L  AF +Y R RD+CTT  HI  M    I V+IE G  L
Sbjct:   34 GLVSTSAAPLVRVEEAPKFELESYIANYTGRTRFNRLYLIGTCSSYLAV--DALKAAIAEAKSGKDVARYLRAVQAL-ADVAPNEPEATIDSDWVERSQKVVKAETDRLEHELRGYKNNLIKESIRMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIERGDWL 210          
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_SCHPO (COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe GN=csn1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  249 QLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIK-KGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMG 719
            Q +++ Y   Y   +KI R +F+A +     ++   +  A  E+K K  N +L++ + ++       N  +D  W +SV    +Q  E+L  EL AY+ NLI+ESIR    D   F+   G    A  SY + R+YCT +  I H+ +  + +SI +G
Sbjct:    9 QEELKRYLDEYGVWSKIFRALFVARNSK--PLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDCF-ENEQLDVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIG 163          
The following BLAST results are available for this feature:
BLAST of FC868930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CSN1_ARATH4.389e-7774.48COP9 signalosome complex subunit 1 OS=Arabidopsis ... [more]
CSN1_DICDI1.096e-2738.06COP9 signalosome complex subunit 1 OS=Dictyosteliu... [more]
CSN1_HUMAN1.432e-2736.16COP9 signalosome complex subunit 1 OS=Homo sapiens... [more]
CSN1_XENLA2.442e-2734.83COP9 signalosome complex subunit 1 OS=Xenopus laev... [more]
CSN1_RAT6.015e-2636.42COP9 signalosome complex subunit 1 OS=Rattus norve... [more]
CSN1_MOUSE6.015e-2636.42COP9 signalosome complex subunit 1 OS=Mus musculus... [more]
CSN1_DROME1.811e-2228.22COP9 signalosome complex subunit 1b OS=Drosophila ... [more]
CSN1_EMENI2.891e-2033.89COP9 signalosome complex subunit 1 OS=Emericella n... [more]
CSN1_SCHPO2.621e-1330.38COP9 signalosome complex subunit 1 OS=Schizosaccha... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31006F07EF AbioticL1 Citrus clementina cDNA clone C31006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868930 ID=FC868930; Name=FC868930; organism=Citrus clementina; type=EST; length=745bp
GGGAGAGTGCGAGGCCATCTCCTCCTCCAGAGACTGGACCAAACCAAAAT
AGCCACTGCCCTCACACACCACATCACAGTGAAGAAGGGCGATAGAAGTA
ACAAGCAATTCCTTAACCAAACGAAACCGTAACCCTAAGTCCTAACGCAA
TGGAACCCGAAGACGAGCAATCGAATTCAATGATGGAGGAGATCTACTCG
AACGGCGGCGAAGAATCGGCGCGTACCAGACCAATCATAAGCGGGGAGCA
GCTGGACGTCGAGGCTTACGCGAGCCTGTACCAAGGGAGGACGAAGATCA
CGCGGCTAATGTTTATCGCCGATCACTGCGACATCGTTTCGATGCAGCTT
GAGGCGCTTCGAATGGCCTACGATGAGATTAAGAAAGGCGAGAACACGCA
ACTTTTCAGAGAGGTTGTGAAGAAGATTGATGGGAGGCTGGGCCCCAATT
ATGCCATGGACGAGGCTTGGTGCGATTCCGTGGATCGCAGAGCCGAACAG
CGCAAGGAGAAACTTGAGAACGAACTCAATGCTTATAGGACAAATTTGAT
CAAAGAAAGTATAAGAATGGGATATAATGATTTTGGAGACTTTTACTATG
CTCATGGTGCACTTGGGGATGCTTTTTAAAGTTATGTTCGCACTCGTGAT
TATTGCACTACATCAAAGCATATTATTCATATGTGTATGAGTGCAATTCT
GGTCAGCATTGAGATGGGTCAATTACTCATGTGACAGCTATGTCA
back to top