FC868931

Overview
NameFC868931
Unique NameFC868931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9423 contig Ccv1_Contig9423:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_SCHPO (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe GN=taf6 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 84/199 (42.21%), Postives = 123/199 (61.81%), Query Frame = 3
Query:  138 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRA---IGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-------------VQAIAAPSNGTNNEQKDGLP----VEIKLPVKHILSRELQLYFDKSLSLL 674
            E+++ +A+ +GI N + + A A+A D+EYRI +++QEA K M HS+RT LT+ D+  AL+  NVEP+YGF +  PL F  A    G   L+YLDD++V+F+ +I APLP+ P + S   HWLAIEGVQP IP+N                  +   ++    E ++G+     VEIK  V+H+LS+ELQLYF++  S L
Sbjct:    9 ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALRTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSAL 207          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_YEAST (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae GN=TAF6 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 83/222 (37.39%), Postives = 125/222 (56.31%), Query Frame = 3
Query:  132 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFR------RAIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPEN----------------------------APVQAIAAPSNGTN-------NEQKDGLPVEIKLPVKHILSRELQLYFDKSLSLL 674
            P++TV+ +A+S+G+ N + D   ALA DVEYRI EI+++A+K  RHS+R  LTTDDV +AL++ NVEP+YG+  G  +            G + ++YLD+++V+F  +I  PLP+ P   +   HWLA+EGVQP I +N                             PV +  A ++ T+       +  K G   E+K  VKH+LS+ELQ+YF+K +S L
Sbjct:   13 PQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKALRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVDFDRLINEPLPQVPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPVTSTTASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTL 234          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_XENLA (Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 82/208 (39.42%), Postives = 118/208 (56.73%), Query Frame = 3
Query:  123 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQA-------------IAAPSN-------------GTNNEQK----DGLPVEIKLPVKHILSRELQLYF 653
            +++P E+++VI++S+GIS  S +    LA +V +RI+E+ Q+A+K M   +R  LT  D+D ALKL+NVEP+YGF     L FR A G  R+L + ++K+ +  D+I  PLPR PLD S+  HWL+IEGVQP IPEN P                +A P               G   E+K    +G P+++K    H LS E QLY+
Sbjct:   10 TLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTPSDIDAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLDVSLKAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLPGKGQGSGEGKGKEKKTAILEGAPLKLKPRSIHELSVEQQLYY 217          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_RAT (Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 84/222 (37.84%), Postives = 124/222 (55.86%), Query Frame = 3
Query:  108 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYF 653
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+NVEP+YGF +   + FR A  G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       AA ++G   E+K     +G P  +K    H LS E QLY+
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYY 224          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_MOUSE (Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 84/222 (37.84%), Postives = 124/222 (55.86%), Query Frame = 3
Query:  108 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYF 653
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+NVEP+YGF +   + FR A  G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       AA ++G   E+K     +G P  +K    H LS E QLY+
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYY 224          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_HUMAN (Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 83/222 (37.39%), Postives = 124/222 (55.86%), Query Frame = 3
Query:  108 EEEKM----SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGTNNEQK-----DGLPVEIKLPVKHILSRELQLYF 653
            EE+K+    +++P E+++V+A+S+GI+    +    L  +V YRI+EI Q+A+K M   +R  LTT D+D ALKL+NVEP+YGF +   + FR A  G R+L++ ++K+V+  D+I  PLPR PLD  +  HWL+IEG QP IPEN P         +A                       A  ++G   E+K     +G P+ +K    H LS E QLY+
Sbjct:    3 EEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYY 224          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6_DROME (Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 70/201 (34.83%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  123 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAP-----------------------VQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYF 653
            S +  E+++VIA+SIG+ + S DAA  LA DV  +++ I+Q+A K M H++R  L+  D+D +LK+RNVEP YGF +   + FR A  G R+L + +DK+++  ++      + PLD ++  HW  +EGVQP +PEN P                         A   P+ G  ++ K+   + +K    H LS E QLY+
Sbjct:   19 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHVKQLATHELSVEQQLYY 219          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6L_MOUSE (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 45/150 (30.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  108 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDV-IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAA 554
            EE +   +P+E+V ++A+S G+   S + A  LA DV YR+RE  Q + + M+H++R  LT +D + AL+  +VE V G+ S   L  R A    DL++ +D++V   ++ +   +P+   +T++  H   ++G   + P+ +   A+++
Sbjct:    5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPLRPA-REGDLYFPEDREVSLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS 152          
BLAST of FC868931 vs. ExPASy Swiss-Prot
Match: TAF6L_HUMAN (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 44/150 (29.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  108 EEEKMSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDV-IEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAA 554
            EE +   +P+E+V ++A+S G+   S + A  LA DV YR+RE  Q + + M+H++R  LT +D + AL+  +VE V G+ S   L  R A    +L++ +D++V   ++ +   +P+   +T++  H   ++G   + P+ +   A+++
Sbjct:    5 EERRFVEIPRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPA-REGELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSS 152          
The following BLAST results are available for this feature:
BLAST of FC868931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TAF6_SCHPO2.097e-3842.21Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_YEAST1.837e-3437.39Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_XENLA1.556e-3339.42Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_RAT3.465e-3337.84Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_MOUSE3.465e-3337.84Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_HUMAN5.911e-3337.39Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6_DROME2.570e-2834.83Transcription initiation factor TFIID subunit 6 OS... [more]
TAF6L_MOUSE1.369e-1330.00TAF6-like RNA polymerase II p300/CBP-associated fa... [more]
TAF6L_HUMAN3.983e-1329.33TAF6-like RNA polymerase II p300/CBP-associated fa... [more]
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Properties
Property NameValue
Genbank descriptionC31006F08EF AbioticL1 Citrus clementina cDNA clone C31006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868931 ID=FC868931; Name=FC868931; organism=Citrus clementina; type=EST; length=697bp
GAGATCCGTGTTCATTAGTTACTCTCTAAAAACTTAATTCTTAAAAACAT
ACGTGCGCACCTCAGTTGCAGAGTTGCAAGTAGAAAATGAAAAACTACTA
AAAGCTAGAAGAAGAGAAAATGAGTATCGTACCAAAGGAAACAGTAGAGG
TTATAGCGCAAAGCATTGGTATTAGTAATTTTTCTACCGATGCAGCGCTT
GCCCTTGCTCCTGACGTCGAATATCGTATACGCGAAATCATGCAGGAGGC
AATTAAATGCATGCGGCATTCAAGGAGAACCACATTGACAACTGATGATG
TTGATGAAGCTCTTAAATTAAGAAACGTGGAGCCGGTGTATGGTTTTGCC
TCAGGGGGTCCTTTGCGGTTCAGAAGAGCTATTGGGTATAGGGATTTGTT
TTACCTTGATGACAAGGATGTGGAATTTAAAGATGTGATTGAAGCTCCTT
TACCTCGAGCACCACTTGATACATCAATTGTCTGTCACTGGCTTGCTATT
GAAGGAGTACAACCTGTAATCCCAGAAAACGCTCCGGTGCAAGCAATTGC
TGCTCCTTCTAATGGCACAAACAATGAACAGAAAGATGGGCTTCCTGTTG
AGATTAAATTACCAGTAAAGCATATATTGTCTAGGGAACTTCAGCTGTAC
TTCGATAAATCACTGAGCTTGCTGTGAGTAGGTCCGATTCAGTCCTT
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