FC868938

Overview
NameFC868938
Unique NameFC868938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:68..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 4.213e-76
Identity = 136/175 (77.71%), Postives = 156/175 (89.14%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            FD+SNPIR+VS DGLR+ E SV Q++GQ+RH LSFARF  RYGK Y++VEEMKLRF+ F +NLDLIRSTN+KGLSY+LG+N+FAD +W+EFQR +LGAAQNCSAT KG+HK+T   LPETKDWRE GIVSPVKDQG CGSCWTFSTTG+LEAAYHQAFGKGISLSEQQLVDCA A
Sbjct:   26 FDESNPIRMVS-DGLREVEESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHKVTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGA 199          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.038e-74
Identity = 129/173 (74.57%), Postives = 155/173 (89.60%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            FD+SNPI++VS D L + E +V+Q++GQ+RH LSF+RF  RYGK Y+SVEEMKLRF+ F +NLDLIRSTN+KGLSY+L LN+FAD +W+EFQR++LGAAQNCSAT KG+HK+T   +P+TKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAYHQAFGKGISLSEQQLVDCA
Sbjct:   26 FDESNPIKMVS-DNLHELEDTVVQILGQSRHVLSFSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEATVPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCA 197          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            F D NPIR V      + E  +LQV+GQ R ALSFARFA R+ K Y+SVEE+K RF  F  NL +IRS NRKGLSY+LG+N+F D +W+EF++H+LGA+QNCSATTKGN KLT  VLPETKDWR+ GIVSPVK QG CGSCWTFSTTG+LEAAY QAFGKGISLSEQQLVDCA A
Sbjct:   25 FADKNPIRQVVFPD--ELENGILQVVGQTRSALSFARFAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLKLTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGA 197          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.832e-64
Identity = 120/176 (68.18%), Postives = 139/176 (78.98%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL-TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            FDDSNPIR V+       E++V+  +G+ R AL FARFA R+GK Y    E++ RF  FS++L+L+RSTNR+GL YRLG+N+FAD SWEEFQ  RLGAAQNCSAT  GNH++  A  LPETKDWRE GIVSPVKDQGHCGSCWTFSTTGSLEAAY QA GK +SLSEQQLVDCA A
Sbjct:   28 FDDSNPIRSVTDHAASALESTVIAALGRTRDALRFARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATLAGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATA 203          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 121/177 (68.36%), Postives = 137/177 (77.40%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL--TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 679
            F DSNPIR V+       E++V   +G+ R AL FARFA RYGK YES  E+  RF  FS++L L+RSTNRKGLSYRLG+N+FAD SWEEF+  RLGAAQNCSAT  GNH++   A  LPETKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAY QA GK ISLSEQQLVDC  A
Sbjct:   25 FADSNPIRPVTDRAASALESTVFAALGRTRDALRFARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFA 201          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.554e-62
Identity = 119/174 (68.39%), Postives = 136/174 (78.16%), Query Frame = 2
Query:  155 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL-TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA 673
            F DSNPIR V+       E++VL  +G+ RHAL FARFA RYGK YES  E++ RF  FS++L+ +RSTNRKGL YRLG+N+F+D SWEEFQ  RLGAAQ CSAT  GNH +  A  LPETKDWRE GIVSPVK+Q HCGSCWTFSTTG+LEAAY QA GK ISLSEQQLVDCA
Sbjct:   27 FADSNPIRPVTDRAASTLESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCA 200          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.617e-27
Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = 2
Query:  182 VSSDGLRDFETSVL-QVIGQARHAL-----SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHK--LTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            VSS  + D +  V+ QV+G A   +      F+ F R++GK+Y S EE   RF+ F  NL   R   +   S   G+ +F+D +  EF++  LG           N    L  + LPE  DWR+ G V+PVK+QG CGSCW+FS TG+LE A   A GK +SLSEQQLVDC
Sbjct:   20 VSSSDVNDGDDLVIRQVVGGAEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDC 190          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHK--LTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDC 670
            F  F +++GK+Y S+EE   RF+ F  NL       +   S R G+ +F+D +  EF+R  LG           N    L    LPE  DWR+ G V+PVK+QG CGSCW+FSTTG+LE A+  A GK +SLSEQQLVDC
Sbjct:   48 FTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDC 187          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 70/144 (48.61%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  251 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            L F  +  ++ K Y S+EE   R   F  N   I + N    +++LGLN+F+D S++E +   L +  QNCSAT KGN+       P + DWR+ G  VSPVK+QG CGSCWTFSTTG+LE+A   A GK +SL+EQQLVDCAQ
Sbjct:   33 LHFKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSAT-KGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQ 174          
BLAST of FC868938 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 65/142 (45.77%), Postives = 93/142 (65.49%), Query Frame = 2
Query:  257 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQ 676
            F  + +++ K Y S  E   R   F+ N   I++ N++  ++++GLN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG CGSCWTFSTTG+LE+A   A GK ++L+EQQLVDCAQ
Sbjct:   33 FTSWMKQHQKTYSS-REYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQ 172          
The following BLAST results are available for this feature:
BLAST of FC868938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
ALEU_ARATH4.213e-7677.71Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH1.038e-7474.57Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP3_SOLLC2.833e-6470.29Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ORYC_ORYSJ4.832e-6468.18Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP2_MAIZE6.977e-6368.36Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEU_HORVU1.554e-6268.39Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
RD19A_ARATH3.617e-2742.11Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH4.723e-2745.71Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CATH_PIG2.344e-2648.61Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_RAT3.999e-2645.77Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31006G04EF AbioticL1 Citrus clementina cDNA clone C31006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868938 ID=FC868938; Name=FC868938; organism=Citrus clementina; type=EST; length=685bp
TCGCCGGGGGCATTCATTTAATCCGAAGCCCTTGAGTGCGGTGCACTCTC
TCCAAACAAAACAGACACAATCATTAGGCATGGCTCGCCCTGAACATTTG
GTCTCGTCCATCATCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATC
AAGCTTCGACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCC
GTGACTTCGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCT
CTCTCCTTTGCCCGTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGT
TGAGGAGATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAA
TCAGATCTACGAATCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAG
TTTGCTGATTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGC
ACAAAACTGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATG
TGCTTCCAGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTT
AAAGACCAAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATC
TCTTGAGGCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAG
AACAGCAGCTTGTAGACTGTGCCCAAGCTTTNCAC
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