FC868941
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 6.850e-59 Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 +S + S VKP + QMV K +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G GGGT AKDA+GND++AA+WL THGPGDRTLT+GLK Sbjct: 16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLK 134 HSP 2 Score: 80.1073 bits (196), Expect = 6.850e-59 Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AEN P Y Sbjct: 135 GDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQY 182
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.979e-58 Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 KSG+ CPS A LVKP RTQM + GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT MLVPY +F PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLK Sbjct: 18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLK 134 HSP 2 Score: 73.1738 bits (178), Expect = 1.979e-58 Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AEN P Y Sbjct: 135 GDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQY 182
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.151e-55 Identity = 77/117 (65.81%), Postives = 87/117 (74.36%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 K+G + PSRA L K AR K + K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT ML+PY FF PP G GGG AKDA+GNDI+AA WL THGPGDRTL +GL+ Sbjct: 19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLR 135 HSP 2 Score: 77.411 bits (189), Expect = 1.151e-55 Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AEN P Y Sbjct: 136 GDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQY 183
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.774e-54 Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 K+GMF PS A L K R ++ GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+ GGT AKDA+GND+IAA+WL TH PGDRTLT+GLK Sbjct: 18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLK 135 HSP 2 Score: 75.0998 bits (183), Expect = 2.774e-54 Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AEN P Y Sbjct: 136 GDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQY 183
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.234e-51 Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 KSG+ S+ L+KP + + + +G MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT MLVPYATFFAPPG G GGT AKDA+GND+IA++WL TH PG+RTLT+GLK Sbjct: 16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134 HSP 2 Score: 73.9442 bits (180), Expect = 1.234e-51 Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AEN P Y Sbjct: 135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQY 182
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 4.644e-51 Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 KSG+ S+ LVKP + + + +G MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT MLVPY TFF PPG G GGT AKDA+GND+IA++WL TH PG+RTLT+GLK Sbjct: 16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134 HSP 2 Score: 73.9442 bits (180), Expect = 4.644e-51 Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AEN P Y Sbjct: 135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQY 182
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 6.053e-51 Identity = 77/122 (63.11%), Postives = 88/122 (72.13%), Query Frame = 2 Query: 80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 KSG+ S+A LVKP + + + MG MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G GT AKDA GND++ +WL TH PG RTLT+GLK Sbjct: 18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLK 136 HSP 2 Score: 77.7962 bits (190), Expect = 6.053e-51 Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AEN P Y Sbjct: 137 GDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQY 184
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.970e-50 Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 2 Query: 95 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 C SRA L KP + + + I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT MLVPY FF P G G+AGGG AKD +GND++A +WL THGP DRTLT+GLK Sbjct: 16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLK 131 HSP 2 Score: 80.1073 bits (196), Expect = 2.970e-50 Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AEN P Y Sbjct: 132 GDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQY 179
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 4.954e-47 Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = 2 Query: 95 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 C +RA L KP + + + I C A SI ADRVPDM KR+LMNLLLLGA+SLPT MLVPY +F P G GS GG AKD +GNDI+ DWL THGP DRTL +GLK Sbjct: 16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLK 128 HSP 2 Score: 80.4925 bits (197), Expect = 4.954e-47 Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AEN P Y Sbjct: 129 GDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQY 176
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.268e-34 Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2 Query: 122 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430 P + Q ++ + ++ A S VPDM KR +MNL+LLG SLP G + + Y FF PP G GG AKDA+GNDI A WL TH GDR+L++GLK Sbjct: 12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLK 111 HSP 2 Score: 68.1662 bits (165), Expect = 6.268e-34 Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 1 Query: 538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681 GDPTYL+V D T+ YG+NAVCTHLGCVVPW +AEN P Y Sbjct: 112 GDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQY 159 The following BLAST results are available for this feature:
BLAST of FC868941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868941 ID=FC868941; Name=FC868941; organism=Citrus clementina; type=EST; length=682bpback to top |