FC868941

Overview
NameFC868941
Unique NameFC868941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.850e-59
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLK
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLK 134          

HSP 2 Score: 80.1073 bits (196), Expect = 6.850e-59
Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AEN    P     Y
Sbjct:  135 GDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQY 182          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.979e-58
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLK
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLK 134          

HSP 2 Score: 73.1738 bits (178), Expect = 1.979e-58
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AEN    P     Y
Sbjct:  135 GDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQY 182          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.151e-55
Identity = 77/117 (65.81%), Postives = 87/117 (74.36%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLR 135          

HSP 2 Score: 77.411 bits (189), Expect = 1.151e-55
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AEN    P     Y
Sbjct:  136 GDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQY 183          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.774e-54
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLK
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLK 135          

HSP 2 Score: 75.0998 bits (183), Expect = 2.774e-54
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AEN    P     Y
Sbjct:  136 GDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQY 183          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.234e-51
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            KSG+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134          

HSP 2 Score: 73.9442 bits (180), Expect = 1.234e-51
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AEN    P     Y
Sbjct:  135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQY 182          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 4.644e-51
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            KSG+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK 134          

HSP 2 Score: 73.9442 bits (180), Expect = 4.644e-51
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AEN    P     Y
Sbjct:  135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQY 182          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.053e-51
Identity = 77/122 (63.11%), Postives = 88/122 (72.13%), Query Frame = 2
Query:   80 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            KSG+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLK
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLK 136          

HSP 2 Score: 77.7962 bits (190), Expect = 6.053e-51
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AEN    P     Y
Sbjct:  137 GDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQY 184          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.970e-50
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 2
Query:   95 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            C SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLK
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLK 131          

HSP 2 Score: 80.1073 bits (196), Expect = 2.970e-50
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AEN    P     Y
Sbjct:  132 GDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQY 179          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.954e-47
Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   95 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLK
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLK 128          

HSP 2 Score: 80.4925 bits (197), Expect = 4.954e-47
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AEN    P     Y
Sbjct:  129 GDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQY 176          
BLAST of FC868941 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.268e-34
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  122 PARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 430
            P + Q   ++ +   ++  A S     VPDM KR +MNL+LLG  SLP G + + Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLK
Sbjct:   12 PCKAQATRRSRVMSVVRAAAVS---SEVPDMNKRNIMNLILLGGASLPVGSLALGYGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLK 111          

HSP 2 Score: 68.1662 bits (165), Expect = 6.268e-34
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  538 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENSSSVPATDPXY 681
            GDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AEN    P     Y
Sbjct:  112 GDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQY 159          
The following BLAST results are available for this feature:
BLAST of FC868941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
UCRIA_ARATH6.850e-5966.39Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.979e-5870.09Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG1.151e-5565.81Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL2.774e-5465.55Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.234e-5163.93Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC4.644e-5163.11Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU6.053e-5163.11Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ2.970e-5062.93Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT4.954e-4758.41Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_VOLCA6.268e-3446.60Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

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Properties
Property NameValue
Genbank descriptionC31006G07EF AbioticL1 Citrus clementina cDNA clone C31006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868941 ID=FC868941; Name=FC868941; organism=Citrus clementina; type=EST; length=682bp
GGGTTGCCTCCAATAATTCTCCTCAATGGCTTCCTCCTCTTCTCTCTCCT
CAGCAACTCCTTCTCAGCTATGCTCAAGCAAGAGTGGTATGTTCTGTCCA
TCGAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAAGAA
TCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTGATA
GAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTTGGGT
GCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTTCTT
TGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATG
CCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCT
GGGGACCGAACCCTCACCGAAGGATTGAAGGATTTCTCACATTTGCAACT
TATTCTGTAGCTCATATTGTGAACTCATTCCCTTGATGCATGGAGTTTTC
TCGTACGTGAAAGGTCGCTCTACAAGTAGATTCATAGGGAGATCCAACCT
ACCTTGTTGTGGAAAAAGACAAAACACTTGCATCATATGGAATCAATGCT
GTCTGCACTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAG
TTCATCTGTCCCTGCCACGGATCCCAANTACA
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