FC868943

Overview
NameFC868943
Unique NameFC868943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868943 vs. ExPASy Swiss-Prot
Match: MENA_SYNY3 (Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=menA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  157 LVTAYLLL--VLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCXXXXXXXXXXXXYLLLGSRRENLCLSITATVLSASLLVGLTTSLILFCSHFHQL 492
            L++ + LL  VLG + ++W    A +   + L+  A+  GY YQ PPFRL Y GLGE +C             L + +   +   S +  +L+ S+ VG++T++ILFCSHFHQ+
Sbjct:  101 LISNFFLLAGVLGLMSMSW---RAQDWTVLELIGVAIFLGYTYQGPPFRLGYLGLGELICLITFGP-------LAIAAAYYSQSQSFSWNLLTPSVFVGISTAIILFCSHFHQV 204          
The following BLAST results are available for this feature:
BLAST of FC868943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MENA_SYNY35.362e-1235.96Probable 1,4-dihydroxy-2-naphthoate octaprenyltran... [more]
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Properties
Property NameValue
Genbank descriptionC31006G09EF AbioticL1 Citrus clementina cDNA clone C31006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868943 ID=FC868943; Name=FC868943; organism=Citrus clementina; type=EST; length=670bp
TTGTCTTTAGTCTTTGGTACACAACTATTAACTCCTCCTATTTGAAGCCA
TTAAAATTGCTAATGTGTATTGTGGGCAGCAATGATGTTTACGATTTCGA
CACAGGAGCTGATAAAAACAAAACAGAATCAGTTGTGAACTTGGTTGGCA
GGGACCCTTGTTACTGCCTACTTGCTTCTTGTCCTTGGCTTCATTGGGCT
GACATGGGCATCTGTGGAGGCAGGAAATCTGCGCGCAATTATGTTACTGA
CTTGTGCAGTTATTTGTGGTTACATATATCAGTGCCCTCCATTTAGGTTA
AGTTATCAAGGATTGGGGGAGCCTTTGTGCTTTGCAGCATTTGGCCCATT
TGCTACCACTGCCTTTTACTTATTGCTTGGCAGCAGAAGAGAAAATCTAT
GTCTATCTATAACGGCTACAGTTCTTTCTGCATCACTCCTTGTTGGTTTA
ACAACCAGCTTAATTCTCTTTTGTAGTCACTTTCATCAGCTCAGGTGGAA
GGCGATCGGAATGTTGGAAAAATGTCGCCTTTGGTGAGGCTGGGAACTGA
AAGAGGCTCTGTAGTGGTGAAATGGGCAGTTATGATTCTCTACTCTCTTC
TTTTTGCTATTGGTTTAAGCAGAGCTCTTCCCTTGAGTTGCATCTTTCTT
TGTGCCATGACTTCGCCCAT
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