FC868951

Overview
NameFC868951
Unique NameFC868951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868951_ssr526 microsatellite FC868951_ssr526:526..537. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9426 contig Ccv1_Contig9426:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868951 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  218 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVER 460
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ SRGFGF++ +TVEEA   I  L+     GR++ V++
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
The following BLAST results are available for this feature:
BLAST of FC868951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YDC1_SCHPO8.094e-1139.51Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC31006H08EF AbioticL1 Citrus clementina cDNA clone C31006H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868951 ID=FC868951; Name=FC868951; organism=Citrus clementina; type=EST; length=685bp
GAGTGATAAGATCTTGTGAGATCGAAAGAGAAGCGAACTCTAACCCAAGG
AAGAATCTCGAAACACACAGGCAAGAGAGTAGATTTTACAAGTACTTGAT
ACGATGTCTTACTCTAGGAGGTCAAGGTATTCACGCTCTTCTTCACCATA
CAATAGATACGGCAGGTCAATGTCTAGGTCAATGTCTCGCAGCCGATCAA
GGAGCCGATCAAGTGATGCGGAAAATCCTGGCAACAATTTGTATGTAACA
GGATTGTCACCTCGTATCACCAAAAGAGAACTTGAGAAGCATTTTGCAGC
TGAGGGAAAGGTGATTGATGTTCACCTTGTGGTCGATCCGTGGACAAGAG
AGTCTCGTGGTTTTGGGTTTGTTACGATGGCCACAGTTGAGGAGGCTGAC
CGTTGCATCAAGTATTTGGATCGTTCTGTTCTTGAGGGTCGCATCATTAC
TGTGGAGAGGTTTTTGTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCA
CCAAACTCCAAAAGTCATACAACTTAACAAACAAACAAATCAAATACATC
AACAAGAATCAGACTGTTAGGGCAAGGAGGCGGAGAGGGCGAACTCCCAC
TCCAGGAAGGTATTTGGGGCTGAGAACCATTCGTGTCTGTCGTCGATCAC
CTAGCAACTCTCCTCCTCGTCGATCTCCAGCTACT
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