FC868956

Overview
NameFC868956
Unique NameFC868956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.105e-74
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 1
Query:  217 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF+RNEF+LESKST GVEFATRSIR DDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA AFAERE  F
Sbjct:    3 GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTF 152          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.629e-70
Identity = 128/151 (84.77%), Postives = 140/151 (92.72%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKST GVEFATRS+  DDK++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA +FAE+E+L+
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLY 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 9.964e-70
Identity = 129/148 (87.16%), Postives = 139/148 (93.92%), Query Frame = 1
Query:  223 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST GVEFATRS++ D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++  AFAERE+L+
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLY 152          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.141e-68
Identity = 123/151 (81.46%), Postives = 139/151 (92.05%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            M  YRADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKST GVEFAT+S+  D+K++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A   AERE L+
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLY 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.045e-67
Identity = 122/151 (80.79%), Postives = 136/151 (90.07%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            MG YR DD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKST GVEFAT+++  D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED  +FAERE+L+
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLY 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.031e-66
Identity = 126/148 (85.14%), Postives = 135/148 (91.22%), Query Frame = 1
Query:  220 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST GVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE A AF ERE L
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGL 149          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.000e-66
Identity = 121/151 (80.13%), Postives = 135/151 (89.40%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETLF 666
            M  Y+ADD+YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKST GVEFAT+S+  D K++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED  AFAE+E+L+
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLY 151          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.000e-66
Identity = 121/150 (80.67%), Postives = 137/150 (91.33%), Query Frame = 1
Query:  214 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            M  YR +DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKST GVEFATR+++ D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED  ++AE+E+L
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESL 150          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 1
Query:  232 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKST GVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+  L
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL 148          
BLAST of FC868956 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 1
Query:  232 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTTGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERETL 663
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKST GVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+  L
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL 148          
The following BLAST results are available for this feature:
BLAST of FC868956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC5.105e-7491.33Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH7.629e-7084.77Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ9.964e-7087.16Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL7.141e-6881.46Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA6.045e-6780.79Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE1.031e-6685.14Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11E_LOTJA3.000e-6680.13Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH3.000e-6680.67Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11B_RAT3.918e-6684.72Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE3.918e-6684.72Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionC31007A02EF AbioticL1 Citrus clementina cDNA clone C31007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868956 ID=FC868956; Name=FC868956; organism=Citrus clementina; type=EST; length=682bp
GAGGGACAAACAAACCCCTCGTTCCAATTTACAAAGTAGAAACAAAGAAA
ACAAACGAAACAAAAACGTGCTCGTTTGACACTAAAAACTATTAAATCCC
AAAACCCGCTCGTGTTTTACGTTTTTGTAGAAGCATTTATTAAAATCTCT
TTCGCGTCAGATGATCTGCTAATCCCAAAAAAAATTAACACATAAGAGAA
CACAAAAAGAGAAATGGGTGCGTACAGAGCGGACGATGACTATGATTATT
TGTTCAAGGTGGTTTTGATCGGCGACTCCGGCGTCGGAAAATCGAACCTT
TTGTCCAGGTTCACACGCAACGAGTTTAGCCTCGAATCAAAGTCCACCAC
TGGCGTCGAGTTTGCTACTCGGAGTATCCGTTGTGATGATAAGATCGTCA
AGGCTCAGATTTGGGATACCGCCGGCCAAGAAAGGTATCGTGCAATCACA
AGTGCATACTATCGAGGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCAC
ACGTCATGTTACATTTGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAG
ATCACACAGATTCAAACATTGTGATCATGCTTGTTGGTAACAAAGCAGAT
CTGCGCCACCTGAGAGCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGA
ACGAGAAACACTTTTTTTATGGAAACATCTGC
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