FC868972

Overview
NameFC868972
Unique NameFC868972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3313 contig Ccv1_Contig3313:84..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.042e-93
Identity = 157/186 (84.41%), Postives = 168/186 (90.32%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED+FEEL KFGEIE LN+CDNLADHMIGNVYVQF+             GRFYSGRPII +FSPVTDFREATCRQ+EENNCNRGGYCNFMHVKL+ R+LR++LFG
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFG 186          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.320e-93
Identity = 159/204 (77.94%), Postives = 172/204 (84.31%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFGXXXXXXXXXXXXPIPHLR 699
            MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDI+EELSKFGE+E LNVCDNLADHMIGNVYVQFR             GRFYSGRPIIVE+SPVTDFREATCRQFEEN+CNRGGYCNFMHVK IGR+LR++L+G            P P  R
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLYGGRSRRSHGRSRSPSPRHR 204          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.319e-91
Identity = 154/186 (82.80%), Postives = 165/186 (88.71%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDIFEEL+KFGE+E LNVCDNLADHMIGNVYV F+             GRFYSGRPII +FSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK I R+LR++LFG
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.192e-89
Identity = 153/186 (82.26%), Postives = 164/186 (88.17%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDIFEELSK+GEIE L+VCDN ADHMIGNVYVQFR             GR+YSGRPIIVEFSPV+DFREATCRQ+EEN+CNRGGYCNFMHVK IGRDLRK+LFG
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFG 186          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60
Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E++F E+  K+GE+E +NVCDNL DH++GNVYV+FR              R+++G+PI  E SPVTDFREA CRQ+E   C RGG+CNFMH+K I R+LR++L+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60
Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E++F E+  K+GE+E +NVCDNL DH++GNVYV+FR              R+++G+PI  E SPVTDFREA CRQ+E   C RGG+CNFMH+K I R+LR++L+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60
Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E++F E+  K+GE+E +NVCDNL DH++GNVYV+FR              R+++G+PI  E SPVTDFREA CRQ+E   C RGG+CNFMH+K I R+LR++L+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.534e-60
Identity = 103/187 (55.08%), Postives = 136/187 (72.73%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P       D     +   ++QEH+++F+E++F EL  K+GEIE +NVCDNL DH++GNVYV+FR              R+++G+ +  E SPVTDFRE+ CRQ+E   C RGG+CNFMH++ I RDLR+QL+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59
Identity = 102/187 (54.55%), Postives = 136/187 (72.73%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P       D     +   ++QEH+++F+E++F EL  K+GEIE +NVCDNL DH++GNVYV+FR              R+++G+ +  E SPVTDFRE+ CRQ+E   C RGG+CNFMH++ I R+LR+QL+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59
Identity = 102/187 (54.55%), Postives = 136/187 (72.73%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P       D     +   ++QEH+++F+E++F EL  K+GEIE +NVCDNL DH++GNVYV+FR              R+++G+ +  E SPVTDFRE+ CRQ+E   C RGG+CNFMH++ I R+LR+QL+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYG 187          
The following BLAST results are available for this feature:
BLAST of FC868972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
U2AFA_ARATH1.042e-9384.41Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFB_ORYSJ2.320e-9377.94Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AFB_ARATH6.319e-9182.80Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ORYSJ1.192e-8982.26Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AF1_MOUSE4.417e-6055.08Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_HUMAN4.417e-6055.08Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_BOVIN4.417e-6055.08Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF4_BOVIN7.534e-6055.08Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]
U2AF4_RAT2.863e-5954.55Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE2.863e-5954.55Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC31007B07EF AbioticL1 Citrus clementina cDNA clone C31007B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868972 ID=FC868972; Name=FC868972; organism=Citrus clementina; type=EST; length=701bp
GGTGTCTGGATAGACAAGCTTTCGGAAATTCCATTTCCTTCACAAGACAA
GGATTCTGCGGTGAAGTTTGCGGGACGCGGACTAGCCATGGCGGAGCACT
TGACATCAATCTTCGGAACGGAAAAGGACCGCGTGAACTGTCCTTTCTAT
TTCAAGATCGGCGCGTGCCGACACGGCGACCGCTGCTCCCGCCTCCACAA
CCGCCCCACAATTTCCCCAACCCTCCTCCTTTCCAACATGTATCAGCGCC
CCGACATGATCACTCCTGGCGTCGACGCCCAGGGCCAGCCCATCGACCCT
CGCAAGATTCAGGAACACTTCGAGGACTTTTACGAGGACATTTTCGAAGA
GCTCAGCAAGTTCGGCGAAATCGAATGCTTAAACGTCTGCGATAATCTCG
CCGACCACATGATTGGCAATGTCTATGTCCAGTTCAGAGAGGAAGAGCAA
GCTGCAGCAGCATTGCATGCTCTGCAAGGACGATTCTACTCCGGCCGTCC
CATCATTGTTGAATTTTCACCCGTTACTGATTTCCGTGAGGCCACTTGTC
GGCAGTTTGAGGAGAATAACTGTAACCGTGGCGGTTATTGTAACTTTATG
CACGTCAAATTGATTGGCAGGGATCTGAGAAAACAACTTTTTGGGAGGTA
CCGTCGTAGAAGCCGAAGCAGGAGTTTCAGTCCCATTCCTCATCTTCGTT
C
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