FC868972
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 342.813 bits (878), Expect = 1.042e-93 Identity = 157/186 (84.41%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED+FEEL KFGEIE LN+CDNLADHMIGNVYVQF+ GRFYSGRPII +FSPVTDFREATCRQ+EENNCNRGGYCNFMHVKL+ R+LR++LFG Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFG 186
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 2.320e-93 Identity = 159/204 (77.94%), Postives = 172/204 (84.31%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFGXXXXXXXXXXXXPIPHLR 699 MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDI+EELSKFGE+E LNVCDNLADHMIGNVYVQFR GRFYSGRPIIVE+SPVTDFREATCRQFEEN+CNRGGYCNFMHVK IGR+LR++L+G P P R Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLYGGRSRRSHGRSRSPSPRHR 204
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 6.319e-91 Identity = 154/186 (82.80%), Postives = 165/186 (88.71%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDIFEEL+KFGE+E LNVCDNLADHMIGNVYV F+ GRFYSGRPII +FSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK I R+LR++LFG Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 1.192e-89 Identity = 153/186 (82.26%), Postives = 164/186 (88.17%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAEHL SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ FEDFYEDIFEELSK+GEIE L+VCDN ADHMIGNVYVQFR GR+YSGRPIIVEFSPV+DFREATCRQ+EEN+CNRGGYCNFMHVK IGRDLRK+LFG Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFG 186
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60 Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P + D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+LR++L+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3) HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60 Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P + D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+LR++L+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 4.417e-60 Identity = 103/187 (55.08%), Postives = 137/187 (73.26%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P + D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+LR++L+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.534e-60 Identity = 103/187 (55.08%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I RDLR+QL+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59 Identity = 102/187 (54.55%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+LR+QL+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.863e-59 Identity = 102/187 (54.55%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+LR+QL+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYG 187 The following BLAST results are available for this feature:
BLAST of FC868972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868972 ID=FC868972; Name=FC868972; organism=Citrus clementina; type=EST; length=701bpback to top |