FC868978

Overview
NameFC868978
Unique NameFC868978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868978_ssr40 microsatellite FC868978_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig509 contig Ccv1_Contig509:9..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.359e-95
Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 3
Query:   69 MAVSLRXXXXXXXXXDSFQLISASDDA--TILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPLI 719
            MA+ L           S  L+ ASDDA   I YESFDE F+GRWIVS K++Y GVWKH+KS+GH+DYGLLV E A+KYAIVKEL E +SLKDGTVVLQ+E RLQNGLECGGAY+KYLRPQE+GW  KEFDNESPY IMFGPDKCGATNKVHFI KHKNPKSGEY+EHHLK PPSVPSDKLTHVYTAILKPDNEL+ILIDGEEK + NFL+++DF+PPLI
Sbjct:    9 MALGLLAMILFFIASSSSHLVRASDDADDAIFYESFDEDFDGRWIVSDKEDYNGVWKHAKSDGHDDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKKKANFLSSEDFEPPLI 227          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 5.362e-93
Identity = 158/197 (80.20%), Postives = 179/197 (90.86%), Query Frame = 3
Query:  129 ISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPLI 719
            I AS DA I YESFDESFEG WIVS+K++Y G WKHSKSEGH+DYGLLV + A+KYAIVKEL++P+ LKDGT+VLQYEVRLQNGLECGGAYLKYLRPQ+AGW +K FDNESPY IMFGPDKCGATNKVHFILKHKNPKSG+Y+EHHLK PPSVPSDKLTHVYTA++KPDNEL ILIDGEEK + NFL+++DF+P LI
Sbjct:   27 ICASSDA-IFYESFDESFEGSWIVSEKEDYPGEWKHSKSEGHDDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDKCGATNKVHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEPALI 222          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.146e-93
Identity = 156/201 (77.61%), Postives = 176/201 (87.56%), Query Frame = 3
Query:  117 SFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPLI 719
            SFQ +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLRPQEAGW  + FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP DKL+HVYTAILKPDNE+RIL+DGEEK + N L+ +DF+P LI
Sbjct:   18 SFQKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALI 218          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.928e-92
Identity = 157/203 (77.34%), Postives = 177/203 (87.19%), Query Frame = 3
Query:  117 SFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELD--EPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPLI 719
            SF  +S  DD TILYESFDE F+GRW+VS+K EY+GVWKH KSEGH+DYGLLV E AKKY IVKELD  EPL+L +GTVVLQYE R Q GLECGGAYLKYLRPQEAGWV + FDN+SPY IMFGPDKCGATNKVHFILKHKNPKSGE++EHHLK PPSVP D L+HVYTA+LK DNE+RIL+DGEEK +GN L+A+DF+PPLI
Sbjct:   18 SFPSVSYCDDQTILYESFDEPFDGRWVVSEKAEYQGVWKHEKSEGHDDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCGATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLI 220          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.331e-88
Identity = 151/203 (74.38%), Postives = 176/203 (86.70%), Query Frame = 3
Query:  117 SFQLISASD--DATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPLI 719
            SF L+ ASD  D  I YESFDE F+ RWIVS K+EY GVWKHSKSEGH+D+GLLV EPA+KYAIVKELD P+SLKDGTVVLQ+E RLQNGLECGGAY+KYL+ QE+GW  K FDNES Y IMFGPD+CGATNKVHFI +HKNPK+G+++EHHLK PPSVPSDKL+HVYTA+LK DNE+ ILIDGEEK + NFL+++DF+P LI
Sbjct:   26 SFHLVRASDEVDDAIFYESFDEDFDNRWIVSGKEEYNGVWKHSKSEGHDDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKKKANFLSSEDFEPALI 228          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.890e-38
Identity = 84/182 (46.15%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  171 DESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPL 716
            D ++ G W V +     G+          D GL+V   A  +AI  +  + +  K  T+V+QYEV+ QN L CGGAY+K L+  +    ++EF N +PY+IMFGPDKCGATNKVHFI +HKNPK+GEY E H+  PP+  + KLT +YT I+KPD   +ILIDGE    G  L  +DF PP+
Sbjct:   77 DWAYVGEWAVEEPTVLNGMVG--------DKGLVVKNVAAHHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKK-LHAEEFSNATPYVIMFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLL--EDFAPPV 247          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 86/203 (42.36%), Postives = 116/203 (57.14%), Query Frame = 3
Query:  162 ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPL 716
            +SFD      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  + A     +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D      GN L  +D  PP+
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTAELSLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPV 271          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 85/203 (41.87%), Postives = 116/203 (57.14%), Query Frame = 3
Query:  162 ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPL 716
            +SFD      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  + +     +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D      GN L  +D  PP+
Sbjct:   74 DSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTSELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPV 271          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 86/203 (42.36%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  162 ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPL 716
            +SFD      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L       +  +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D      GN L  +D  PP+
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLD-QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPV 270          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 86/203 (42.36%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  162 ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPPL 716
            +SFD      WI+S+  KD+       Y G W     K SK  G  D GL++   AK +AI  +L++P       +++QYEV  QNG+ECGGAY+K L       +  +F +++PY IMFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   IL+D      GN L  +D  PP+
Sbjct:   73 DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLD-QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPV 270          
The following BLAST results are available for this feature:
BLAST of FC868978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CALX_SOYBN3.359e-9575.34Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX_HELTU5.362e-9380.20Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX1_ARATH9.146e-9377.61Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX2_ARATH5.928e-9277.34Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA2.331e-8874.38Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_ASPFU2.890e-3846.15Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CALX_MOUSE5.640e-3442.36Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CALX_RAT1.641e-3341.87Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]
CALX_PONAB1.641e-3342.36Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]
CALX_HUMAN1.641e-3342.36Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31007C01EF AbioticL1 Citrus clementina cDNA clone C31007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868978 ID=FC868978; Name=FC868978; organism=Citrus clementina; type=EST; length=720bp
CATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTCTCTC
TCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCCTGCT
TTTCGCAGCTTTCGATTCATTTCAATTGATCTCCGCTTCTGATGATGCCA
CGATCTTGTACGAGTCGTTTGACGAGTCATTCGAAGGACGATGGATCGTT
TCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAGAGTGAGGG
TCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAAGTACGCGA
TAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGTTGTC
CTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTGCATA
TCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAGTTCG
ACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAATGTGGTGCA
ACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAGAGTGGAGA
GTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAAAC
TGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAATT
TTAATTGATGGAGAGGAGAAAGCAGAAGGCAATTTCCTCGCTGCTGATGA
TTTTCAGCCACCGCTCATTC
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