FC868979

Overview
NameFC868979
Unique NameFC868979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868979 vs. ExPASy Swiss-Prot
Match: GRC3_SCHPO (Protein grc3 OS=Schizosaccharomyces pombe GN=grc3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 44/144 (30.56%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  275 PQEWSDAADSIAYDSNTSP--PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXXXXIPCLKTPXRC--YFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 694
            P+ W   ++ + + ++ S    P   +CG K  GK++FSR++ N LLQ+Y+ +AYLD D GQPE    G                  +  P        GD+S ++DP  Y+  +T L+  Y+   Y+FN+ E   +  +PLI+
Sbjct:  310 PESWCSFSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVPSGHISLYYINSPLQGPVFARMLFPTYMLRLHLGDISPQKDPDHYIACVTRLFAEYKD--YIFNQ-EISQKEIIPLII 450          
BLAST of FC868979 vs. ExPASy Swiss-Prot
Match: NOL9_DICDI (Nucleolar protein 9 homolog OS=Dictyostelium discoideum GN=nol9 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 2
Query:  272 IPQEWSDAADS-IAYDSNTSPPPIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXXXXIP-CLKTPXRCYFFGDVSSKRDPTAYLKYITTLYD 622
            IP EW +  ++   Y+ + +   ++ + CG +N GK+TF+R L+N LL++Y  + +++TD GQ EFT  G                  C   P + YFFGD S K +P  +L     L D
Sbjct:  248 IPNEWLNLINTQFLYNDHCNNNGLSILTCGERNVGKSTFNRILINKLLKKYTHIIFIETDTGQTEFTPSGIMSIDIINSPLLGPPFTHCKNNPLKSYFFGDTSPKNNPEYFLNLSFQLID 367          
BLAST of FC868979 vs. ExPASy Swiss-Prot
Match: NOL9_HUMAN (Nucleolar protein 9 OS=Homo sapiens GN=NOL9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  335 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXXXXIPCLKTPXRCYFFGDVSSKRDPTAYLKYITTLYDYYRKE 637
            P+  +CG+++ GK+TF+R+L+N LL     V YL+ D+GQ EFT PG                  L+TP +  ++G  S K +   Y+  +  ++  Y++E
Sbjct:  300 PVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGPPFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRE 400          
The following BLAST results are available for this feature:
BLAST of FC868979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GRC3_SCHPO3.983e-1330.56Protein grc3 OS=Schizosaccharomyces pombe GN=grc3 ... [more]
NOL9_DICDI4.404e-1232.50Nucleolar protein 9 homolog OS=Dictyostelium disco... [more]
NOL9_HUMAN4.869e-1131.68Nucleolar protein 9 OS=Homo sapiens GN=NOL9 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC31007C02EF AbioticL1 Citrus clementina cDNA clone C31007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868979 ID=FC868979; Name=FC868979; organism=Citrus clementina; type=EST; length=694bp
GGAGAGTACCCAGCAGTCACGCTCTACTGCTAGCCTTCACAAAATTCAAC
ACGATCAATACCCAAAATAACAAAATCTTACACTCACGCCGCAGCCGCTG
TGTTATATAATGACAATGTAATGAGCATACAAGAAGCCAACAAACGACAC
GGACCGAAAACAAAAATAAGGCAGAGCACAAAATCAAAACAAAGAACAGC
CTGCAACCCGTAGCCGTATAGCTATGGCCGCTTATATGCCACAGACTGAG
AATCCATCTCCAGCCATTTACATCCCACAAGAATGGTCCGATGCCGCCGA
CTCCATAGCTTACGATTCAAACACTTCCCCTCCTCCTATTGCCTTCATTT
GTGGAGCCAAAAACTGTGGCAAAACTACCTTCTCTCGCCACCTTGTCAAC
GTTCTTCTCCAGAGATATAAGAAAGTAGCGTATTTGGATACCGATGTTGG
GCAGCCTGAATTTACTGCTCCTGGTTTTTTGTCCCTCACTGTGGTTGATA
CACTGACGCCAGATTTGACAATTCCATGCTTGAAGACGCCAAANAGGTGC
TATTTCTTTGGTGATGTTTCTTCAAAAAGAGATCCAACAGCATATTTGAA
GTATATCACTACCCTATATGATTACTATCGCAAGGAGTACTACATGTTTA
ATGAGAGTGAAAGCCCTGGCCGGACTGAGTTGCCTCTCATTGTG
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