FC868986

Overview
NameFC868986
Unique NameFC868986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 77/189 (40.74%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSN-----------PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNII-KSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            +V V+F TKL    +VP   +A+PS+L R+GLS ++N+LL A++P     PFDFL++GELVR SLEQ LLA  +SAE  LE+EY+ AV P +++  + HDDWVS+VDGS             G +++G YD L R+W         +  H G V+ V  + KS G     + T  KD+ +++W++ + E
Sbjct:    6 QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLL-ALDPP---RPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVDGSRCAPASSSGGSPSGVVVSGSYDGLLRLWNGDLEAVASVSAHAGGVNCVRFLPKSQG---DLLLTSGKDRLVKMWQLSSSE 187          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DICDI (Ribosome biogenesis protein WDR12 homolog OS=Dictyostelium discoideum GN=wdr12 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  121 EDQNEENSRRVQVRFKTKLK-----PPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            E +N+ N+++V+   K K+K        +V    IA+P  L R GLS V+++L +  N    S+PFDFL+NG+ +R +L++ +    +S E+++ IEY++A+   K E+   HDDWVS VDGSN G +++G YD   RVW   G       GH   V SV  I       ++  +   D+TLR+W  +  +
Sbjct:    2 ESENKNNNKKVKEESKVKVKFITNDANIRVTDTPIAVPVRLGRLGLSEVIHHLREEENET--SKPFDFLINGKFIRTTLDKHIKNANLSEEQIITIEYLEAITEPKREKECQHDDWVSCVDGSNFGLVVSGSYDLGVRVWGYDGELISTGTGHLAGVKSVCWISDKNADNLSFVSASMDKTLRVWNFNKSQ 190          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASHGO (Ribosome biogenesis protein YTM1 OS=Ashbya gossypii GN=YTM1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681
            E+  +V+V+F T+ +  +  V    + +P +L R+GLS ++N+LL    P     PFDFL++G+L+R SL+ +L  KG+S+E VL +EY +AV P    +   ++DWVSA+D      I++G YD + R W   G       GH GAV +V  I S  L      +G  D+TLRLWK   +++
Sbjct:    3 EDKSQVKVKFFTRSRTSRLHVLDAPLLLPVSLKRYGLSEIINHLLGLAEPV----PFDFLIDGQLLRCSLQDYLTRKGLSSEAVLNVEYTRAVLPPSYLKSFSNEDWVSALD-VGAERIVSGSYDGVVRTWNLSGKIEKQYSGHTGAVRAVKFISSTRL-----VSGGNDRTLRLWKTKNDDV 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_XENTR (Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 65/176 (36.93%), Postives = 101/176 (57.39%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T+ +   KV     +IP+      LS+++N LL+  N + K   FDFLV  + +RM L + + A+GIS E V+EIEY++ +   + EE  +HDDWVS++ G+   +ILTG YD   R+W   G     + GH  AV  V  +K D L  + ++    DQT++LW+ + E
Sbjct:    3 QIQARFFTE-EEKYKVDDVPFSIPATSEIVDLSNLINKLLETKNGDHKPVEFDFLVKSQFLRMPLIKHMEAEGISTEVVVEIEYVEKITAPQPEECMMHDDWVSSIAGTEE-WILTGSYDKTCRIWSLEGKTIMTITGHTEAVKDVTWVKKDSLSCLLLSASI-DQTIQLWEWNTE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DANRE (Ribosome biogenesis protein wdr12 OS=Danio rerio GN=wdr12 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++Q RF T+ K    V     +IP++     LS V+N LL+A N   K   FDFLV G+ +R SL++ +  + IS E+V+EIEY++     + EE  +HDDW+S+V+  +  +ILTG YD   R+W   G     + GH   V  V  +K DGL  V + T   DQT+ LW+ ++E
Sbjct:    3 QLQARFFTENKK-YLVDDVPFSIPASSEVADLSGVINKLLEAKNAGHKHVEFDFLVRGQFLRTSLDKHIETENISTEEVVEIEYVEKFTAPQPEECIMHDDWISSVEADSE-WILTGSYDKTARIWSMEGKAVMTVAGHADVVKDVAWVKRDGLNSV-LLTASLDQTVMLWEWNSE 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_YEAST (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae GN=YTM1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681
            E+  +V++RF T+ K     V    +  P +L R+GLS +VN+LL +  P     PFDFL+ GEL+R SL  +L  KG+S+E  L +EY +A+ P        ++DWVS++D G     I++G YD + R W   G       GH G + +V  I +  L    V+ G  D+TLRLWK   ++L
Sbjct:    3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRAILPPSYLNSFSNEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRL----VSAG-NDRTLRLWKTKNDDL 177          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_YEAS7 (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=YTM1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681
            E+  +V++RF T+ K     V    +  P +L R+GLS +VN+LL +  P     PFDFL+ GEL+R SL  +L  KG+S+E  L +EY +A+ P        ++DWVS++D G     I++G YD + R W   G       GH G + +V  I +  L    V+ G  D+TLRLWK   ++L
Sbjct:    3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRAILPPSYLNSFSNEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRL----VSAG-NDRTLRLWKTKNDDL 177          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_KLULA (Ribosome biogenesis protein YTM1 OS=Kluyveromyces lactis GN=YTM1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681
            +V++RF T+ +     V    I  P +L R+GLS +VN+LL+      KS PFDFL++GEL+R SL+ +L+ KG+S+E  L +EY +AV P        ++DWVS++D GSN  +I +G YD + R +   G       GH G + +V+ I S  L    V+ G  D+TLRLWK   ++L
Sbjct:    7 QVKLRFFTREEDETLHVNDAPIYAPVSLKRYGLSEIVNHLLELP----KSMPFDFLIDGELLRTSLQDYLIKKGLSSETFLNVEYTRAVLPPSYLSSFDNEDWVSSLDVGSN--YIYSGSYDGIVRTYNLSGKVEKQYSGHSGPIRAVHYISSTRL----VSAG-NDRTLRLWKTKNDDL 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_CANGA (Ribosome biogenesis protein YTM1 OS=Candida glabrata GN=YTM1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  139 NSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            ++ +V+V+F T+ K     V    +  P +L R+GLS +VN+LL++  P     PFDFL++GEL+R SL+++L  KG+S+E  L +EY +AV P        +DDWVSA+D S+    I +G YD + R W   G       GH GAV +V  I +       + +   D++LRLWK   ++
Sbjct:    4 DTSQVKVKFFTREKDESLHVDDVPMYAPISLKRYGLSEIVNHLLESETPI----PFDFLIDGELLRTSLQEYLTKKGLSSETTLTVEYTRAVLPPSFLANFNNDDWVSALDVSDDFRHIYSGSYDGVVRTWNMSGKVEKQYSGHTGAVKAVKYISN-----TRIVSAGNDRSLRLWKTKNDD 176          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_VANPO (Ribosome biogenesis protein YTM1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=YTM1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  139 NSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681
            +S +V++RF T+ +     V    +  P +L R+GLS VVN+LL    P     PFDFL++GEL+R+SL+++L   G+S+E  L +EY +AV P        ++DWVS++D  +   I++G YD + R W   G       GH   + +V  I +       + +G  D+TLRLWK   E+L
Sbjct:    4 DSSQVKLRFFTREQDESLHVQDAPMYAPISLKRYGLSEVVNHLLGFEKPV----PFDFLIDGELLRISLQEYLTKHGLSSETFLNVEYTRAVLPPSFLSSFSNEDWVSSLDVGDNNKIISGSYDGVVRTWNLSGKIEKQYSGHSAPIRAVKYISN-----TRMVSGGNDRTLRLWKTKNEDL 176          
The following BLAST results are available for this feature:
BLAST of FC868986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WDR12_CHLRE7.225e-3240.74Ribosome biogenesis protein WDR12 homolog OS=Chlam... [more]
WDR12_DICDI8.266e-2835.08Ribosome biogenesis protein WDR12 homolog OS=Dicty... [more]
YTM1_ASHGO1.011e-2537.16Ribosome biogenesis protein YTM1 OS=Ashbya gossypi... [more]
WDR12_XENTR1.320e-2536.93Ribosome biogenesis protein wdr12 OS=Xenopus tropi... [more]
WDR12_DANRE2.251e-2538.07Ribosome biogenesis protein wdr12 OS=Danio rerio G... [more]
YTM1_YEAST1.906e-2436.96Ribosome biogenesis protein YTM1 OS=Saccharomyces ... [more]
YTM1_YEAS71.906e-2436.96Ribosome biogenesis protein YTM1 OS=Saccharomyces ... [more]
YTM1_KLULA3.251e-2439.44Ribosome biogenesis protein YTM1 OS=Kluyveromyces ... [more]
YTM1_CANGA3.251e-2436.81Ribosome biogenesis protein YTM1 OS=Candida glabra... [more]
YTM1_VANPO4.245e-2435.71Ribosome biogenesis protein YTM1 OS=Vanderwaltozym... [more]

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Properties
Property NameValue
Genbank descriptionC31007C09EF AbioticL1 Citrus clementina cDNA clone C31007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868986 ID=FC868986; Name=FC868986; organism=Citrus clementina; type=EST; length=736bp
GAGATTCCCTCCTCTTTAACTTCACCCTAGCTCAATCTGTGATTCCGCAA
ATTAACTTCATCCCATTAAAAATTAAAAAACCGAAAAAAAGGGCAAATGG
ACATGAACATCGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGC
GTTCAAGTTCGCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAG
CAACTCAATTGCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTG
TCGTGAACAACTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCG
TTTGATTTTTTGGTCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTT
TCTTCTCGCCAAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACA
TAAAGGCTGTGGCACCACAAAAAGAGGAAGAACCATCTTTACATGATGAC
TGGGTCAGTGCAGTTGATGGTTCTAATCCTGGGTTCATCTTAACTGGTTG
CTATGATAATTTGGGAAGGGTCTGGAAAGCAGGTGGAGTGTGTACACATA
TATTGGAAGGACACTGTGGTGCAGTCTCTTCTGTTAATATCATTAAGTCT
GATGGTTTGAAATATGTCACTGTAGCCACTGGCTTCAAAGATCAGACCTT
GAGATTGTGGAAAGTTGATGCAGAGGAGCTAGTTAATCATCCTAAGAGAT
AAGGTCATTCAAAATTTACGTGGGCATAAGCATCTG
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