FC868992

Overview
NameFC868992
Unique NameFC868992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868992_ssr116 microsatellite FC868992_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9438 contig Ccv1_Contig9438:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.158e-61
Identity = 117/176 (66.48%), Postives = 134/176 (76.14%), Query Frame = 1
Query:  175 SIIHDMMWRRSHRVVGDAADHDMAGGSSPTC----CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            SI    +  RSHR  G A      G +        CWA LP ELLRE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD  L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+ISL   DMSKGS+TY+GKLRSNF
Sbjct:   16 SISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNF 191          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.257e-58
Identity = 115/177 (64.97%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  163 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            MT +S++ +M   R HRVV  AA       SS    W+ LP+ELLREIL ++E  D   WPSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNF
Sbjct:    1 MTFRSLLQEMR-SRPHRVVHAAAS---TANSSDPFSWSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNF 173          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.257e-58
Identity = 117/180 (65.00%), Postives = 136/180 (75.56%), Query Frame = 1
Query:  163 MTIKSIIHDMMWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            MT++S+I +M   R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD   WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SDDMS+ S  Y+GK+RSNF
Sbjct:    1 MTLRSLILEMR-SRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNF 179          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.281e-54
Identity = 97/141 (68.79%), Postives = 118/141 (83.69%), Query Frame = 1
Query:  268 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            CW  LP ELLRE+LA++E ++  WP RR VVACAGVCRSWR I +EIV+ PE SG LTFPIS+KQPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGKFLLAARKCRR TCT+Y+ISL  +D+SK + +Y+GKLRSNF
Sbjct:   54 CWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNF 194          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.673e-54
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1
Query:  202 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            RS RVV D +    A   S   CWA++P ELLR++L +IE ++  WPSR++VV+CAGVCR+WR+I KEIV+VPELS  LTFPIS+KQPGPR  L+QC+I RNRS QTY+LYL L  A + DDGKFLLAA++ RR TCTDYIISL+ DD+S+GS+TY+GKLRSNF
Sbjct:   32 RSQRVVQDTSVPVDAFKQS---CWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNF 192          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.157e-49
Identity = 91/164 (55.49%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  202 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            +S   V +  D D+    S    WA+LP ELLR+++ ++EA++S WPSR+ VV+CA VC++WR++ KEIV  PE  G LTFP+S+KQPGPRD ++QCFIKR++S  TYHLYL L+ A LAD GKFLL+A++ R+ TCT+Y+IS+ +D++S+ SSTY+GKLRSNF
Sbjct:   39 KSQSTVHELCDADLIIQESR---WASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNF 199          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.157e-49
Identity = 87/141 (61.70%), Postives = 118/141 (83.69%), Query Frame = 1
Query:  271 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+S+KQPGPRD  +QCFIKR++S  TYHLYL L+ A L ++GKFLL+A++ RR T T+Y+IS+H+D +S+ S+TY+GK+RSNF
Sbjct:   57 WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNF 197          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.791e-48
Identity = 90/166 (54.22%), Postives = 128/166 (77.11%), Query Frame = 1
Query:  202 RSHRVVGDAADHDMAGGSSP---TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSN 687
            RSH  V +  D   A  ++    + CWANLP ELLR+++ ++EA+++AWPSR++VVACA VCR+WR + +EIVK PE  G +TFP+S+KQPGPR+  +QCFIKR++STQTY+LYL L++A L + GKFLL+A++  RATCT+Y I + +D+ S+ S+ Y+GKLRSN
Sbjct:   33 RSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSN 198          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.340e-48
Identity = 86/142 (60.56%), Postives = 123/142 (86.62%), Query Frame = 1
Query:  268 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            CWA+LP ELLR+I+ ++E +++ WPSR+ VVACAGVCR+WR++ KEIVK PEL G +TFPIS++QPGPRD  +QCFI+R++STQTY+LYLSL +A L D+GKFLL+A++   ATCT+Y+IS++++++S+ ++T +GKLRSNF
Sbjct:   52 CWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNF 193          
BLAST of FC868992 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.991e-48
Identity = 85/141 (60.28%), Postives = 119/141 (84.40%), Query Frame = 1
Query:  271 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 690
            WANLP  LLR+++ K++ ++S WP+R+ VVACAGVC++WR + K+IVK PE SG LTFP+S+KQPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS+ +D++S+ SSTY+GKL+SNF
Sbjct:   55 WANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNF 195          
The following BLAST results are available for this feature:
BLAST of FC868992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP6_ORYSJ9.158e-6166.48Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP9_ARATH3.257e-5864.97Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH3.257e-5865.00Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP11_ORYSJ1.281e-5468.79Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP3_ARATH1.673e-5464.02Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP8_ORYSJ6.157e-4955.49Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH6.157e-4961.70Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ1.791e-4854.22Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP13_ORYSJ2.340e-4860.56Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP5_ARATH3.991e-4860.28Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC31007D03EF AbioticL1 Citrus clementina cDNA clone C31007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868992 ID=FC868992; Name=FC868992; organism=Citrus clementina; type=EST; length=714bp
AGCACAAGCACAAGCACTGCTCCTCTCGACCCTAATCTCTATCTGAATTC
TCATCATCTCTCAAGTATTCTTCAGTCACCCAACAACCTCACCAACAAAT
CATAAAGCCTTCTCAAAATAAATAAATATTGAAATTAGAATTAAATCTCG
ACGGCTTCGTGTATGACAATAAAAAGCATAATTCATGACATGATGTGGCG
GAGGTCGCACCGCGTGGTCGGCGACGCGGCGGACCACGACATGGCCGGCG
GCTCTTCTCCTACGTGCTGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGA
GAGATTCTGGCCAAAATCGAGGCGGCGGATAGCGCGTGGCCGTCACGGAG
AAGCGTTGTCGCGTGCGCTGGAGTTTGTCGGAGCTGGAGACAGATCACTA
AAGAGATCGTCAAAGTTCCTGAACTTTCCGGTTACTTGACTTTCCCCATC
TCCGTCAAACAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAAA
GCGAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAATG
CACTAGCAGACGATGGAAAGTTCCTTCTTGCTGCCCGCAAGTGTAGACGT
GCCACCTGTACAGATTATATTATCTCTTTACATTCTGATGATATGTCAAA
AGGGAGCAGCACTTATCTTGGGAAACTGAGATCAAATTTTTAGGAACCAG
TTCATAGTCTATGA
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