FC868996

Overview
NameFC868996
Unique NameFC868996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868996_ssr59 microsatellite FC868996_ssr59:59..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9439 contig Ccv1_Contig9439:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK3_ARATH (Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.206e-105
Identity = 181/203 (89.16%), Postives = 196/203 (96.55%), Query Frame = 1
Query:   97 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            G GQ  DFPAV THGGQFI Y+IFG+LFEIT+KYRPPI+PIGRGAYGIVCSVL+TETNELVAMKKIANAFDNHMDAKRTLREIKLL+H DHEN+IA++DVVPPPLRR+F+DVYI+ ELMDTDL+QIIRSNQSLSEEHCQYFLYQLLRGLKYIHSAN+IHRDLKPSNLLLNANCDLKICDFGLARPTSEN+FMTEYVVTRWYRA
Sbjct:    4 GGGQYTDFPAVETHGGQFISYDIFGSLFEITSKYRPPIIPIGRGAYGIVCSVLDTETNELVAMKKIANAFDNHMDAKRTLREIKLLRHLDHENIIAIRDVVPPPLRRQFSDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANIIHRDLKPSNLLLNANCDLKICDFGLARPTSENDFMTEYVVTRWYRA 206          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK6_ARATH (Mitogen-activated protein kinase 6 OS=Arabidopsis thaliana GN=MPK6 PE=1 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 5.078e-96
Identity = 161/197 (81.73%), Postives = 185/197 (93.91%), Query Frame = 1
Query:  115 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            + PA  +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS +N+ETNE VA+KKIANAFDN +DAKRTLREIKLL+H DHEN++A++D++PPPLR  F DVYIA ELMDTDL+QIIRSNQ+LSEEHCQYFLYQ+LRGLKYIHSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE++FMTEYVVTRWYRA
Sbjct:   35 NIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSAMNSETNESVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPLRNAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSESDFMTEYVVTRWYRA 231          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MMK1_MEDSA (Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.520e-95
Identity = 166/211 (78.67%), Postives = 187/211 (88.63%), Query Frame = 1
Query:   73 MADVAQVNGVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            M+D A         + PAV +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS  N+ETNE VA+KKIANAFDN +DAKRTLREIKLL+H DHENV+A++D+VPPP R  F DVYIA ELMDTDL+QIIRSNQ+LSEEHCQYFLYQ+LRGLKYIHSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE +FMTEYVVTRWYRA
Sbjct:   13 MSDAAPAPPQMGIENIPAVLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSAHNSETNEHVAVKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRA 223          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: NTF4_TOBAC (Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.292e-95
Identity = 161/197 (81.73%), Postives = 182/197 (92.39%), Query Frame = 1
Query:  115 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            + PA  +HGG+FIQYNIFGN+FE+TAKY+PPIMPIG+GAYGIVCS LN+ETNE VA+KKIANAFDN +DAKRTLREIKLL+H DHEN++A++D++PPP R  F DVYIA ELMDTDL+QIIRSNQ LSEEHCQYFLYQ+LRGLKYIHSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE +FMTEYVVTRWYRA
Sbjct:   32 NIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRA 228          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.577e-95
Identity = 160/203 (78.82%), Postives = 183/203 (90.15%), Query Frame = 1
Query:   97 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            G G   +  A  +HGG+FIQYNIFGN+FE+TAKY+PPI+PIG+GAYGIVCS LN+ET E VA+KKIANAFDN +DAKRTLREIKLL+H DHEN++A++D++PPP R  F DVYIA ELMDTDL+QIIRSNQ+LSEEHCQYFLYQ+LRGLKYIHSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE +FMTEYVVTRWYRA
Sbjct:   33 GAGMMENIQATLSHGGRFIQYNIFGNVFEVTAKYKPPILPIGKGAYGIVCSALNSETGEQVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQRNSFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRA 235          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MAPK_PEA (Mitogen-activated protein kinase homolog D5 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.251e-94
Identity = 162/197 (82.23%), Postives = 182/197 (92.39%), Query Frame = 1
Query:  115 DFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            + PA  +HGG+FIQYNIFGN+FE+TAKYRPPIMPIG+GAYGIVCS  N+ETNE VA+KKIANAFDN +DAKRTLREIKL++H DHENV+A++D+VPPP R  F DVYIA ELMDTDL+QIIRSNQ+LSEEHCQYFLYQ+LRGLKYIHSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE +FMTEYVVTRWYRA
Sbjct:   34 NIPATLSHGGRFIQYNIFGNIFEVTAKYRPPIMPIGKGAYGIVCSAHNSETNEHVAVKKIANAFDNKIDAKRTLREIKLVRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRA 230          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSJ (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. japonica GN=MPK5 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.294e-91
Identity = 156/198 (78.79%), Postives = 179/198 (90.40%), Query Frame = 1
Query:  112 ADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            A+F    THGG+++ Y+IFGN FE+T KY+PPIMPIGRGAYGIVCSV+N ET E+VA+KKIANAF+N MDAKRTLREIKLL+H DHEN+I ++DV+PPP+ + F DVYIA ELMDTDL+ IIRSNQ LSEEHCQYFLYQ+LRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARP+SE++ MTEYVVTRWYRA
Sbjct:    7 AEFRPTMTHGGRYLLYDIFGNKFEVTNKYQPPIMPIGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVIPPPIPQAFNDVYIATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRA 204          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSI (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. indica GN=MPK5 PE=1 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.294e-91
Identity = 156/198 (78.79%), Postives = 179/198 (90.40%), Query Frame = 1
Query:  112 ADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            A+F    THGG+++ Y+IFGN FE+T KY+PPIMPIGRGAYGIVCSV+N ET E+VA+KKIANAF+N MDAKRTLREIKLL+H DHEN+I ++DV+PPP+ + F DVYIA ELMDTDL+ IIRSNQ LSEEHCQYFLYQ+LRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARP+SE++ MTEYVVTRWYRA
Sbjct:    7 AEFRPTMTHGGRYLLYDIFGNKFEVTNKYQPPIMPIGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVIPPPIPQAFNDVYIATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRA 204          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: NTF6_TOBAC (Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.254e-86
Identity = 145/204 (71.08%), Postives = 173/204 (84.80%), Query Frame = 1
Query:   94 NGVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            N   +  +   +PTH G++++YN+ GN FE+T+KY PPI P+GRGAYG+VC   N+ET E VA+KKI NAF+N +DAKRTLREIKLL H DHEN+I +KD+V PP R EF DVYI  ELMDTDL+QIIRS+Q+L+++HCQYFLYQLLRGLKY+HSANV+HRDLKPSNLLLNANCDLKICDFGLAR TSE +FMTEYVVTRWYRA
Sbjct:    3 NETNEKLEIKGIPTHEGKYVEYNVLGNFFEVTSKYIPPIQPVGRGAYGMVCCATNSETKEEVAIKKIGNAFENRIDAKRTLREIKLLSHMDHENIIKIKDIVRPPDREEFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEADFMTEYVVTRWYRA 206          
BLAST of FC868996 vs. ExPASy Swiss-Prot
Match: MPK6_ORYSJ (Mitogen-activated protein kinase 6 OS=Oryza sativa subsp. japonica GN=MPK6 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.793e-86
Identity = 145/203 (71.43%), Postives = 173/203 (85.22%), Query Frame = 1
Query:   97 GVGQTADFPAVPTHGGQFIQYNIFGNLFEITAKYRPPIMPIGRGAYGIVCSVLNTETNELVAMKKIANAFDNHMDAKRTLREIKLLQHFDHENVIAVKDVVPPPLRREFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVVTRWYRA 705
            G G  A    + THGG+++ YN++GN FE+++KY PPI PIGRGAYGIVC+ +N+E  E VA+KKI NAFDNH+DAKRTLREIKLL+H DHEN+IA+KD++ PP R  F DVYI +ELMDTDL+QIIRSNQ L+++HCQYFLYQLLRGLKY+HSANV+HRDLKPSNL LNANCDLKI DFGLAR T+E + MTEYVVTRWYRA
Sbjct:    9 GGGGGAQIKGMGTHGGRYVLYNVYGNFFEVSSKYAPPIRPIGRGAYGIVCAAVNSENGEEVAIKKIGNAFDNHIDAKRTLREIKLLRHMDHENIIAIKDIIRPPRRDNFNDVYIVSELMDTDLHQIIRSNQPLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIADFGLARTTTETDLMTEYVVTRWYRA 211          
The following BLAST results are available for this feature:
BLAST of FC868996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MPK3_ARATH1.206e-10589.16Mitogen-activated protein kinase 3 OS=Arabidopsis ... [more]
MPK6_ARATH5.078e-9681.73Mitogen-activated protein kinase 6 OS=Arabidopsis ... [more]
MMK1_MEDSA2.520e-9578.67Mitogen-activated protein kinase homolog MMK1 OS=M... [more]
NTF4_TOBAC3.292e-9581.73Mitogen-activated protein kinase homolog NTF4 OS=N... [more]
MPK1_ORYSJ9.577e-9578.82Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]
MAPK_PEA1.251e-9482.23Mitogen-activated protein kinase homolog D5 OS=Pis... [more]
MPK5_ORYSJ1.294e-9178.79Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
MPK5_ORYSI1.294e-9178.79Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
NTF6_TOBAC1.254e-8671.08Mitogen-activated protein kinase homolog NTF6 OS=N... [more]
MPK6_ORYSJ2.793e-8671.43Mitogen-activated protein kinase 6 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31007D07EF AbioticL1 Citrus clementina cDNA clone C31007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868996 ID=FC868996; Name=FC868996; organism=Citrus clementina; type=EST; length=705bp
GAGACTCGATAAAAACACAACCTCCAACGAGAGCGTAGAAAATTAATTAG
AGAGAAAAAGAGAGAGAGTAAAATGGCTGACGTGGCGCAGGTCAACGGCG
TAGGTCAAACGGCTGATTTTCCTGCGGTACCGACGCACGGCGGTCAGTTT
ATACAGTACAATATATTTGGAAACTTGTTTGAAATCACGGCCAAGTATCG
GCCTCCGATCATGCCGATTGGTCGCGGCGCGTACGGGATCGTTTGCTCGG
TGTTGAATACGGAGACGAATGAGCTCGTTGCGATGAAGAAAATAGCGAAC
GCTTTTGATAATCACATGGATGCCAAGCGAACGCTTCGTGAGATTAAGCT
TCTGCAACATTTCGATCATGAAAATGTGATAGCTGTAAAAGATGTGGTTC
CCCCACCGTTACGAAGAGAATTCACTGATGTCTATATTGCTGCGGAACTC
ATGGACACTGACCTTTACCAAATTATTCGCTCAAATCAAAGTTTATCCGA
GGAGCACTGCCAGTATTTCTTGTATCAACTTCTTCGAGGACTCAAGTATA
TCCATTCAGCAAATGTTATTCATCGGGATTTGAAGCCCAGCAATCTCTTG
TTAAATGCAAATTGTGATTTAAAAATTTGTGATTTTGGTCTTGCTCGTCC
AACCTCGGAGAATGAGTTCATGACAGAGTATGTTGTCACNAGATGGTACC
GAGCC
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