FC869000

Overview
NameFC869000
Unique NameFC869000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869000_ssr329 microsatellite FC869000_ssr329:329..340. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO1_ARATH (Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.432e-58
Identity = 103/133 (77.44%), Postives = 120/133 (90.23%), Query Frame = 1
Query:  319 TTINDDDDAAF--GGGPLPFPVGNLLQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            +++ DD++     GGGP+P+PVGNLL +APCGFVVTDA+EPD PIIYVN+VFE +TGY AE+VLG NCRFLQCRGPFAKRRHPLVDS VVSEIR+C++EGIEFQGELLNFRKDGSPLMNRLRL+PIYGDD+ I
Sbjct:   15 SSLADDEEGGLFPGGGPIPYPVGNLLHTAPCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVLGGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDDTI 147          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO2_ARATH (Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.560e-50
Identity = 92/125 (73.60%), Postives = 111/125 (88.80%), Query Frame = 1
Query:  337 DDAAFGG--GPLPFPVGNLLQSAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDE 705
            +D  FGG  G +PFPVG+L  +APCGFVV+DALEPD+PIIYVN+VFE +TGY AE+V+GRNCRFLQCRGPF KRRHP+VDS++V+++R+CLE GIEFQGELLNFRKDGSPLMN+LRL PI  +DE
Sbjct:   21 EDGWFGGDNGAIPFPVGSLPGTAPCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIGRNCRFLQCRGPFTKRRHPMVDSTIVAKMRQCLENGIEFQGELLNFRKDGSPLMNKLRLVPIREEDE 145          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO1_ORYSJ (Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 1
Query:  352 GGGPLPFPVGNLLQ-SAPCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            GGG   F +  +L+ S PCG VVTDALEPD PIIYVN  FE  TGY AE+VLGRNCRFLQCRGPFA+RRHPLVD+ VVSEIR+C++ G EF+G+LLNFRKDGSPLMN+L L+PIYGDDE I
Sbjct:   40 GGGMFSFAIEGMLRASGPCGLVVTDALEPDCPIIYVNCGFEEATGYRAEEVLGRNCRFLQCRGPFAQRRHPLVDAMVVSEIRKCIDNGTEFRGDLLNFRKDGSPLMNKLHLTPIYGDDETI 160          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO2_ORYSJ (Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.170e-43
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1
Query:  403 CGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            CG VV+DALEPD PIIYVN  FE  TGY AE+VLGRNCRFLQCRGPFAKRRHPLVD++VV++IRRCLEEG  FQG+LLNFRKDGSP M +L+L+PIYGDDE I
Sbjct:   54 CGLVVSDALEPDFPIIYVNRGFEDATGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDTTVVTDIRRCLEEGTVFQGDLLNFRKDGSPFMAKLQLTPIYGDDETI 156          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO3_ARATH (Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.988e-40
Identity = 85/129 (65.89%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  328 NDDDDAAFGGGPLPFPVGNLLQS-APCGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            ND  +       LP  VG       P  F+V+DALEPD P+IYVN VFE  TGY A++VLGRNCRFLQ R P A+RRHPLVD  VVSEIRRCLEEGIEFQGELLNFRKDG+PL+NRLRL+PI  DD  I
Sbjct:   28 NDGIEEQVEDEKLPLEVGMFYYPMTPPSFIVSDALEPDFPLIYVNRVFEVFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIRDDDGTI 156          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: ADO3_ORYSJ (Adagio-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0547000 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.232e-37
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDD 702
            VV+DA+E D P+IYVN+ FE+ TGY A++VLGRNCRFLQ R P A+RRHPLVD  VVSEIRRCL EGIEFQGELLNFRKDG+PL NRLRL P++GDD
Sbjct:   68 VVSDAVEVDFPVIYVNAAFEAATGYRADEVLGRNCRFLQFRDPRAQRRHPLVDPMVVSEIRRCLNEGIEFQGELLNFRKDGAPLYNRLRLIPMHGDD 164          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  409 FVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD 699
            FVV+DA +P  PI+Y +S F ++TGY +++++GRNCRFLQ          P  D + V++IR C++ G  + G LLN++KDG+P  N L ++PI  D
Sbjct:  135 FVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQ---------GPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD 222          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_PSE14 (Blue-light-activated protein OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2483 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD 699
            +VTD    D+PII+ N  F  +TGY +E+++G NCRFLQ          P  D +VV  IR  ++E ++   E+LN+RKDGS   N L +SP+Y D
Sbjct:   36 IVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQ---------GPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYND 122          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: LOVHK_PSEU2 (Blue-light-activated protein OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2700 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  412 VVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQCRGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGD 699
            +VTD   PD+PII+ N  F  +TGY +E+++G NCRFLQ          P  D + V  IR  +++ ++   E+LN+RKDGS   N L +SP+Y D
Sbjct:   36 IVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQ---------GPDTDRTAVQSIRDAIDQRVDISTEILNYRKDGSSFWNALFISPVYND 122          
BLAST of FC869000 vs. ExPASy Swiss-Prot
Match: WC1_NEUCR (White collar 1 protein OS=Neurospora crassa GN=wc-1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  403 CGFVVTDALEPDHPIIYVNSVFESITGYHAEDVLGRNCRFLQC--RGPFAKRRHPLVDSSVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLSPIYGDDEXI 711
            C FVV D    D PIIYV+  F+++TGY   +++GRNCRFLQ       A  +   V+++ V  +++ + EG E Q  L+N+RK G P +N L + PI  D E I
Sbjct:  391 CAFVVCDVTLNDCPIIYVSDNFQNLTGYSRHEIVGRNCRFLQAPDGNVEAGTKREFVENNAVYTLKKTIAEGQEIQQSLINYRKGGKPFLNLLTMIPIPWDTEEI 495          
The following BLAST results are available for this feature:
BLAST of FC869000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ADO1_ARATH7.432e-5877.44Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 P... [more]
ADO2_ARATH2.560e-5073.60Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 P... [more]
ADO1_ORYSJ1.717e-4672.73Adagio-like protein 1 OS=Oryza sativa subsp. japon... [more]
ADO2_ORYSJ5.170e-4378.64Putative adagio-like protein 2 OS=Oryza sativa sub... [more]
ADO3_ARATH6.988e-4065.89Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 P... [more]
ADO3_ORYSJ7.232e-3775.26Adagio-like protein 3 OS=Oryza sativa subsp. japon... [more]
PHOT2_ARATH1.418e-1643.30Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=... [more]
LOVHK_PSE144.125e-1642.71Blue-light-activated protein OS=Pseudomonas syring... [more]
LOVHK_PSEU25.388e-1641.67Blue-light-activated protein OS=Pseudomonas syring... [more]
WC1_NEUCR9.190e-1640.95White collar 1 protein OS=Neurospora crassa GN=wc-... [more]

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Properties
Property NameValue
Genbank descriptionC31007D11EF AbioticL1 Citrus clementina cDNA clone C31007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869000 ID=FC869000; Name=FC869000; organism=Citrus clementina; type=EST; length=724bp
GGACCAAAAATTCTCTCTCTTTCCGGGAAAAAAAGAAAAAAGAAAAAGGA
AAAAAGAACTCAAATACTGTCTCTGCGCAAGTCCTTACTCCTTAGCTAAA
CTCTCCCGAACATTACTCACCCCACGTTTCTTTGCTCACCCCTTTTCTTT
TTTTTGCTTACCAGTTTTCCTATTTAACCCCTAGGTATAGGGTTTGCTAT
TTCCCCATTTCTCAAATGGGTTGAATTTTTTTTTTTTTAATTTCTTCTTG
TAATTTTGGGTTAATTCATGGAGTGGGATAGTAATTCTGATTTTAGCGAA
GACGAGGATGAGGAATTGACGACGATTAACGACGACGACGATGCTGCTTT
TGGTGGTGGCCCGCTACCTTTCCCTGTCGGGAACTTGCTCCAATCGGCGC
CCTGTGGGTTCGTTGTTACCGATGCTCTTGAACCCGACCATCCCATTATT
TATGTCAATTCTGTCTTTGAGTCCATCACTGGGTATCATGCTGAAGATGT
TCTGGGTCGTAATTGCCGTTTCCTGCAATGTAGAGGGCCATTTGCAAAGA
GAAGACATCCATTGGTGGATTCCTCAGTAGTTTCAGAAATTAGGAGATGT
CTTGAGGAGGGTATTGAATTCCAAGGCGAGTTGTTGAACTTCCGGAAAGA
TGGATCCCCTCTGATGAATAGATTGCGACTGTCTCCTATATATGGAGATG
ACGAAANCATACTCATGTCATTGG
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