FC869002

Overview
NameFC869002
Unique NameFC869002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12151 contig Ccv1_Contig12151:283..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 4.612e-97
Identity = 163/224 (72.77%), Postives = 193/224 (86.16%), Query Frame = 2
Query:   41 KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRGVHS 712
            KLG       L+  L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVVYPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PHPDERVEYE W NSNDECG KC++QI+F+KNFK   + L +G H+
Sbjct:    2 KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHPDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHT 225          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.428e-84
Identity = 147/226 (65.04%), Postives = 185/226 (81.86%), Query Frame = 2
Query:   32 MREKLGFLVGILFLLCGLSF--GRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            MR    +LV I+++  G S   GRFVVEKN+L+VTSPE I+GVYECA+GNFGVPQYGG++ G VVYPK NQKACK FD+ ++SF+SR  GLPTF+LVDRGDCYFTLKAWNAQ+ GAA ILVAD++ E LITMD PE+E +DA+YLQNITIPSAL+S+SLG +IK +++ G+ V+++LDW EALPHP++RV YE W NSNDECG KC++QI F+K FK   + L +G
Sbjct:    1 MRTTNVWLVVIVWVTVGWSSCTGRFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNITIPSALVSRSLGSAIKTAIAHGDPVHISLDWREALPHPNDRVAYELWTNSNDECGSKCDAQIRFLKRFKGAAQILEKG 226          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.974e-84
Identity = 141/220 (64.09%), Postives = 180/220 (81.82%), Query Frame = 2
Query:   44 LGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            L +L+ +  L+  L+  RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG++ GTVVYPK NQK+CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+ + A+Y++NITIPSAL++K  G+ +KK++SGG+MVN+NLDW EA+PHPD+RVEYE W NSNDECG KC+  ++FVK+FK   + L +G
Sbjct:    8 LPWLLLLTLLVSPLNDARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKG 227          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 4.950e-83
Identity = 143/227 (63.00%), Postives = 182/227 (80.18%), Query Frame = 2
Query:   32 MREKLGFLVGILFLLCGLS---FGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            M++ L +L  +L L   +S     RFVVEKNSL VTSPE IKG ++ AIGNFG+PQYGG++ GTVVYPK NQK+CK F +  +SFKS+PG LPTFLLVDRGDC+F LK WNAQK GA+A+LVAD+  EPLITMDTPEE+ + A+Y++NITIPSAL++K  G+ +KK++SGG+MVN+NLDW EA+PHPD+RVEYE W NSNDECG KC+  ++FVK+FK   + L +G
Sbjct:    1 MKQLLCYLPWLLLLSLVVSPFNEARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKG 227          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.592e-81
Identity = 142/221 (64.25%), Postives = 175/221 (79.19%), Query Frame = 2
Query:   41 KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            +L  ++ + F+L  LS  RFVVEKNSL VTSPEKIKG ++ AIGNFG+PQYGG++ G VVYPK N K CK FD    SFKSRPG LPT LL+DRG C+F LK WNAQK GA+A+LVADD  EPLITMDTPEE+ + A+Y++NITIPSALI KS G+ +K ++SGG+MVN+NLDW EA+PHPD+RVEYE W NSNDECG KC+  I+F+K+FK   + L +G
Sbjct:    5 RLSAILFLGFMLTSLSTARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCKDFDS---SFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKG 222          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.508e-60
Identity = 110/223 (49.33%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   35 REKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            R  L FL+  L ++  +   RFVVEK S+ V +PE+++  ++ +I NFG+P YGG LIG+VVYP +    C  F +   +FK +    PT LL+DRG CYF LKAW+AQ+ GAAA+LVAD+  EPL+TMD+PEE      +++ +TIPS LI KS GD +++    G+ + + LDW E++PHPD+RVEYE W NSNDECG +C+ Q+DFVKNFK   + L +G
Sbjct:    7 RASLTFLLAALTIIAMVVEARFVVEKESISVLNPEEMRSKHDGSIANFGLPDYGGFLIGSVVYPDSKTDGCSAFGK---TFKPK-FPRPTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVLIDKSFGDDLRQGFQKGKNIVIKLDWRESVPHPDKRVEYELWTNSNDECGARCDEQMDFVKNFKGHAQILEKG 225          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.474e-58
Identity = 104/208 (50.00%), Postives = 147/208 (70.67%), Query Frame = 2
Query:   89 FGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRGVHS 712
            FGRF+VEK+S+ + +P  ++  ++ AI NFGVP YGG +IG+VVY       C  FD+   +FK +    PT L++DRG+CYF LK WN Q+ G AA+LVAD+  EPLITMD+PEE     ++++ + IPSALI  S  +++K++L  GE V + +DW+E+LPHPDERVEYE W N+NDECG +C+ Q++FVKNFK   + L +G +S
Sbjct:   24 FGRFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDK---TFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYS 227          
BLAST of FC869002 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.367e-55
Identity = 105/228 (46.05%), Postives = 152/228 (66.67%), Query Frame = 2
Query:   20 SPAKMREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWDNSNDECGPKCESQIDFVKNFKEQPRYLSRG 703
            SP+     L  ++ +  ++      RF VEK+SL V +  ++   ++ AI NFG+P+YGG +IG+VVY   +   C  F++   +F ++    P  LL+DRG C F LK WN Q+ GAAA+L+AD+  EPLITMDTP++E  D +++  + IPSALI +S GDS+KK+L  GE V + +DW+E++P+PDERVEYE W N+NDECG  C+ QIDF+KNFK   + L +G
Sbjct:    2 SPSNKGTVLALILALTMVVVNGFSSRFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFNK---TFNTK-SPYPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE--DPDFIDKVKIPSALILRSFGDSLKKALKRGEEVILKMDWSESIPNPDERVEYELWANTNDECGVHCDKQIDFIKNFKGMAQILEKG 223          
The following BLAST results are available for this feature:
BLAST of FC869002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR1_ARATH4.612e-9772.77Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH3.428e-8465.04Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR3_ARATH9.974e-8464.09Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR4_ARATH4.950e-8363.00Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR1_PEA1.592e-8164.25Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR7_ARATH4.508e-6049.33Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH2.474e-5850.00Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH4.367e-5546.05Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC31007E01EF AbioticL1 Citrus clementina cDNA clone C31007E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869002 ID=FC869002; Name=FC869002; organism=Citrus clementina; type=EST; length=712bp
GGAGGAGAAAGATTGAAAATCTCCTGCAAAGATGAGGGAAAAGCTAGGGT
TTTTGGTGGGTATTTTGTTTTTACTATGTGGCTTAAGTTTTGGAAGATTT
GTTGTGGAGAAAAATAGCTTGAAAGTGACATCCCCAGAGAAAATCAAAGG
AGTTTATGAATGTGCAATTGGGAATTTTGGGGTTCCTCAATATGGAGGAA
CTTTAATTGGTACCGTGGTTTATCCAAAAGCCAATCAAAAGGCTTGTAAG
GGTTTTGATGAAGTTGATCTTTCCTTCAAGTCAAGGCCTGGAGGATTACC
CACTTTTCTCCTTGTTGATCGAGGAGATTGTTACTTCACCTTGAAGGCCT
GGAATGCGCAAAAAGGTGGAGCTGCTGCTATTCTTGTGGCAGATGATAAG
ACTGAACCTTTGATTACCATGGACACCCCTGAAGAAGAGAATGCAGACGC
TGAATATCTACAAAACATCACCATTCCCTCAGCCCTTATAAGCAAATCTT
TGGGTGACAGTATCAAGAAGTCTCTAAGTGGTGGGGAAATGGTTAACATG
AATCTAGATTGGACAGAGGCTCTTCCGCATCCTGATGAGCGTGTGGAGTA
TGAATTCTGGGACAATAGCAACGATGAGTGCGGGCCAAAGTGTGAGAGCC
AGATTGATTTTGTTAAGAACTTCAAGGAGCAGCCCAGATACTTGAGCAGA
GGGGTACACTCA
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