FC869003

Overview
NameFC869003
Unique NameFC869003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9441 contig Ccv1_Contig9441:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869003 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 2 
Query:  236 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQ 595
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST S +ASP AQ +P+Q
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSST-SNVASPAAQPFPIQ 127
The following BLAST results are available for this feature:
BLAST of FC869003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH3.477e-1541.67Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionC31007E02EF AbioticL1 Citrus clementina cDNA clone C31007E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869003 ID=FC869003; Name=FC869003; organism=Citrus clementina; type=EST; length=626bp
GACGACTCCACGTCAACAACATCCACCACAAAAAGGCAAAATCAAAATTA
AAACCAAAGCAAAGGCGAGGAAGCTGCGAGAGAAAATTAAAAAAAATTGA
AAAAAATCGAAGAAGAAGAGGAAGGGGTCTGGAAATTTCTCGAGTTTAAT
TCAAATGGAGGAATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGG
CCGGAATGGAAGTAGACGATAAGAAGAAGCATGAGGTTGCGCAAAACGAC
GCCGGATCTGCTGCAGGGCTTGATTTGTCGGGGAACGAGGTGTTTAACAA
CACCATCAGGGCCACGGCAATCCCAACTTCTGGGGTGAATGCCACGGACC
TTGCTCCAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTT
GATGCCATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTC
TTCTGCCACTGTTACTAACACAAGTGACATGAAGAAGGACGATACCAACT
GTCCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACT
GCAAGTGCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAA
TCTCCTCTGNCAATTGCAAGCTGAAC
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