FC869007

Overview
NameFC869007
Unique NameFC869007
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869007_ssr238 microsatellite FC869007_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869007_ssr529 microsatellite FC869007_ssr529:529..546. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869007_ssr107 microsatellite FC869007_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9443 contig Ccv1_Contig9443:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 109/200 (54.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:  172 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            MINFEATELRLGLP                           KRGF++TV DLKLNLS+     +  +     K         + KPPAKAQVVGWPPVRSFRKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLL
Sbjct:    1 MINFEATELRLGLPGGNHGGEMAGKNNG-------------KRGFSETV-DLKLNLSSTAMDSVSKVDLENMKEK-------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLL 179          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.084e-43
Identity = 109/204 (53.43%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADT----------VVDLKLNLSTKESGGIDVI-------QKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            + FE TELRLGLP                           KRGF++T           VDL LNLS+KE+              KT  K  +   A D +KPPAK QVVGWPPVRSFRKN++AVQK   E   K       N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSFT GNC SQGMKDFMNESKL DLL
Sbjct:    1 MGFEETELRLGLPGNGGTEEVLIR----------------KRGFSETETGHEDESATTVDLMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPA-DPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLL 184          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.966e-43
Identity = 101/187 (54.01%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            +N + TEL LGLP                           KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAKAQVVGWPPVR++RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+ G+QGM DFMNESK++DLL
Sbjct:    1 MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLL 171          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 99/195 (50.77%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  169 KMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDN---EEGDNKAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            +++N +ATEL LGLP                           KRGF++TV DL LNL + + G +D ++         T   D SKPPAKAQVVGWPPVR++RKN+M  QK +   EE  ++         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+QGM DFMNESKL++LL
Sbjct:    4 QLMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNKEGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLL 185          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 104/225 (46.22%), Postives = 120/225 (53.33%), Query Frame = 1
Query:  181 FEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLST----------KESGG-------IDVI------------------QKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLL 735
            FEATELRLGLP                           KRGFA+T+ DLKL L            KE          +D++                  +++  +S+  T A D  KP A KAQVVGWPPVRS+RKNI+AVQ    KD  +G            AFVKVSMDGAPYLRKVDLK+YKSY ELS AL KMFSSFTIGNCGS G+   MNESK+ DLL
Sbjct:    7 FEATELRLGLPGGGGDGDAAAAAARSSSG---------KRGFAETI-DLKLKLEPAAAAVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG-MNESKIADLL 220          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 93/192 (48.44%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLST----KESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLL 735
            +N   TEL LGLP                           KRGF++TV DLKLNL+     KE      +     K  SA    D +KPPAKAQVVGWPPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G + G +GM DFMNE KL+DL+
Sbjct:    7 LNLRETELCLGLPGGDTVAPVTGN----------------KRGFSETV-DLKLNLNNEPANKEGSTTHDVVTFDSKEKSAC-PKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLV 172          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 91/220 (41.36%), Postives = 112/220 (50.91%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXM--------------------KRGFADTVVDLK-LNLSTKESGGIDVIQKTKGKSASATGATDLSK--------PPAKAQVVGWPPVRSFRKNIMA--VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLL 735
            +NF+ATELRLGLP                          +                    KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AKAQVVGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y SYQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL
Sbjct:   47 LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLL 262          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 75/164 (45.73%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  295 KRGFADTV---VDLKLNLSTKESGGIDVIQKTKG-----------KSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLL 735
            KRGF+DT+    + K ++ T+++        T+            K  S+T     S P AKAQ+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+ Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLL
Sbjct:  120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLL 279          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 87/213 (40.85%), Postives = 110/213 (51.64%), Query Frame = 1
Query:  175 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNL----STKESGGIDVIQKTK------GKSASATGA--------TDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQG--MKDFMNESKLIDLL 735
            +NF+ATELRLGLP                           KR F+D + D    +    ST  +G +      +      GKS + T          +  + P +KAQVVGWPP+RSFRKN MA  +  + G+N      +A         +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG  GS G   +D +NES+L DLL
Sbjct:   38 LNFKATELRLGLPGSESPERVDSRFLALNKSSCPVSGA--KRVFSDAINDSNKWVFSPGSTTATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLL 248          
BLAST of FC869007 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 81/193 (41.97%), Postives = 104/193 (53.89%), Query Frame = 1
Query:  187 ATELRLGLP----XXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSK---PPAKAQVVGWPPVRSFRKNIMAVQKDNEEG--DNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDL 732
            ATELRLGLP                               KRGFAD +V        + +GG     K    +A A    +  K   P AKAQVVGWPP+RS+RKN MA+ +   +G  D +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G+  S G   +D +++ +L+DL
Sbjct:   21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAAGG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDL 208          
The following BLAST results are available for this feature:
BLAST of FC869007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
IAA16_ARATH2.165e-4454.50Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
AUX28_SOYBN4.084e-4353.43Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA14_ARATH6.966e-4354.01Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA7_ARATH1.112e-4050.77Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA30_ORYSJ2.400e-3546.22Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA17_ARATH5.910e-3448.44Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA8_ARATH1.506e-2941.36Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA9_ARATH1.410e-2745.73Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA27_ARATH3.141e-2740.85Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ5.358e-2741.97Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007E06EF AbioticL1 Citrus clementina cDNA clone C31007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869007 ID=FC869007; Name=FC869007; organism=Citrus clementina; type=EST; length=737bp
GGCTCTTTCTTTGAATGCAATCAGAAAAAAAAAAACCAAAAGTACTACTC
TCGATGCCCTCTCAAAACACAAACAAACCAACCAAAAAAAAAAAACAAGA
GAGTGATAATTAATTAATTAAGAGAGGAGTTTAAGGAGTGTTTAGTGTGT
AAATTTGAAAGTTTCATTAAGATGATTAACTTCGAAGCGACGGAGCTTCG
GCTAGGGTTACCGGGCGGTAACGGCGGAAGCAGTGAAGGTGGTGGTGGTG
GCGGCGGCGGTGAGAAAGCCAAGAACAATAACATTAATGGCATGAAGAGA
GGATTTGCAGACACCGTTGTTGATTTGAAGCTAAATCTTTCAACAAAAGA
GTCAGGTGGGATTGATGTAATTCAGAAGACGAAGGGCAAAAGTGCTTCTG
CTACTGGGGCTACAGACCTTTCAAAGCCTCCGGCCAAGGCACAAGTTGTG
GGTTGGCCACCCGTTAGATCATTCAGAAAGAACATCATGGCCGTCCAAAA
GGACAATGAAGAAGGTGATAATAAGGCTAGCAGCAGCAGCAGCAGCAATG
TAGCTTTTGTTAAAGTGAGCATGGATGGTGCCCCATACTTGCGCAAGGTT
GATTTGAAGCTATACAAAAGCTACCAAGAACTCTCTGATGCCCTTGGCAA
AATGTTCAGCTCTTTCACCATTGGTAACTGTGGGTCACAAGGGATGAAGG
ATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAA
back to top