FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:2..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ARATH (Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.192e-58
Identity = 121/172 (70.35%), Postives = 134/172 (77.91%), Query Frame = 2
Query:  197 CYPGSVSLVGFSSPRLKTPSFPKSLKKRSF-GLVRASAAVE--TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            C  GSVS +GFS P++ +P+  K  +K+S  G V+A  AVE  T+ AIIRIGTRGSPLALAQA+ETR KL   HPEL ++GAI I IIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPEKTILPCNL REDVRDAFI          PA S+V
Sbjct:   27 CSLGSVSAIGFSLPQISSPALGKCRRKQSSSGFVKACVAVEQKTRTAIIRIGTRGSPLALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVV 198          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PEA (Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.062e-53
Identity = 111/142 (78.17%), Postives = 118/142 (83.10%), Query Frame = 2
Query:  293 VRASAAVE-----TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +RAS AVE      K A+IRIGTRGSPLALAQAHETR+KLMA H ELA+EGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALIN  IDIAVHSMKDVPTYLPE+TILPCNL REDVRDAFI          PA S++
Sbjct:   44 IRASLAVEQQTQQNKTALIRIGTRGSPLALAQAHETRDKLMASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVI 185          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ORYSJ (Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 2
Query:  293 VRASAAVET----KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            VRA+ AV+     KV++IRIGTRGSPLALAQAHETR+KL A H ELA+EGA++IVIIKTTGD IL +PLADIGGKGLFTKEID+AL+  +IDIAVHSMKDVPTYLPE TILPCNL REDVRDAFI          PA S+V
Sbjct:   33 VRAAVAVQAEAQAKVSLIRIGTRGSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKEIDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVV 173          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PARDP (Porphobilinogen deaminase OS=Paracoccus denitrificans (strain Pd 1222) GN=hemC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRIGTRGS LALAQAHETR++LMA H   A   A +IV+IKTTGD++L +PL +IGGKGLFT+EI++AL+  +IDIAVHSMKD+PT  PE  ++ C L REDVRDAF+          P  ++V
Sbjct:   11 IRIGTRGSALALAQAHETRDRLMAAHGLAAD--AFRIVVIKTTGDRVLDRPLKEIGGKGLFTREIEDALLAHEIDIAVHSMKDMPTIQPEGLVIDCYLPREDVRDAFVSAQFAAISELPQGAVV 132          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_NITWN (Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  338 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IGTRGSPLALAQAHE R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRD FI          PA + V
Sbjct:   13 IGTRGSPLALAQAHEVRDRLARAH-QVAPE-RIAIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGATV 132          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_RHILO (Porphobilinogen deaminase OS=Rhizobium loti GN=hemC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            ++IGTRGSPLALAQAHET+ +LMA H   A+  A ++V+I T+GD+I  +PL++ GGKGLFTKEI+EAL+   IDIAVHS KD+PT LP+   L   L RED RDAF+
Sbjct:    5 LKIGTRGSPLALAQAHETQARLMAAHGLPAE--AFEVVVISTSGDRIQDRPLSEAGGKGLFTKEIEEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFV 110          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_NITHX (Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 2
Query:  338 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IGTRGS LALAQA+E R++L   H ++A E  I I  I+T+GD I  +PL D+GGKGLFTKEI+EAL+   ID AVHS KDVPT+LP+ T LP  L REDVRDAFI          PA SIV
Sbjct:   13 IGTRGSALALAQANEVRDRLARAH-QVAPE-RIVIKTIRTSGDAIQDRPLFDVGGKGLFTKEIEEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGSIV 132          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_AGRT5 (Porphobilinogen deaminase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hemC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 64/123 (52.03%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  335 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            RIGTRGSPLALAQA+ETR++LMA H     E   +IV++ T GD+I  + L++IGGKGLFT+E++  L++ ++DIAVHS KD+PT LPE   L   L RED+RDAFI          P  ++V
Sbjct:    7 RIGTRGSPLALAQAYETRSRLMAAHG--LPEEMFEIVVLSTKGDRITDRALSEIGGKGLFTEELENQLLSGELDIAVHSSKDMPTVLPEGLHLSAFLPREDMRDAFIGRTAPKLLELPQGAVV 127          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_RHIME (Porphobilinogen deaminase OS=Rhizobium meliloti GN=hemC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 2
Query:  335 RIGTRGSPLALAQAHETRNKLMALH---PELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            RIGTRGSPLA+AQ HETR++L A H   PE+      +IVI+ T GD+I  + LA+IGGKGLFT+E+++ L++  +D AVHS KD+PT LPE   L   L RED+RDAF+
Sbjct:    7 RIGTRGSPLAMAQTHETRDRLAAAHGLPPEM-----FEIVILSTKGDRITDRSLAEIGGKGLFTEELEQQLLSGDLDFAVHSSKDMPTKLPEGLFLSAFLPREDIRDAFV 111          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_OCHA4 (Porphobilinogen deaminase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 62/112 (55.36%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  320 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            K   ++IGTRGS LALAQA+ETR +LM  H     E AI+I+ + T GD+I  + L++IGGKGLFT+EI++AL + +ID+AVHS KD+PT LP+   L   L+RED RDAFI
Sbjct:    7 KNGTLKIGTRGSKLALAQAYETRRRLMEAHG--LPEEAIEIIPMSTAGDRIQDRALSEIGGKGLFTEEIEQALTDGRIDLAVHSTKDMPTVLPDGLHLSVFLEREDPRDAFI 116          
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_ARATH3.192e-5870.35Porphobilinogen deaminase, chloroplastic OS=Arabid... [more]
HEM3_PEA1.062e-5378.17Porphobilinogen deaminase, chloroplastic OS=Pisum ... [more]
HEM3_ORYSJ2.074e-4972.34Porphobilinogen deaminase, chloroplastic OS=Oryza ... [more]
HEM3_PARDP2.083e-3358.87Porphobilinogen deaminase OS=Paracoccus denitrific... [more]
HEM3_NITWN5.310e-2958.20Porphobilinogen deaminase OS=Nitrobacter winograds... [more]
HEM3_RHILO9.057e-2960.19Porphobilinogen deaminase OS=Rhizobium loti GN=hem... [more]
HEM3_NITHX1.183e-2859.02Porphobilinogen deaminase OS=Nitrobacter hamburgen... [more]
HEM3_AGRT52.231e-2752.03Porphobilinogen deaminase OS=Agrobacterium tumefac... [more]
HEM3_RHIME1.107e-2655.45Porphobilinogen deaminase OS=Rhizobium meliloti GN... [more]
HEM3_OCHA49.373e-2655.36Porphobilinogen deaminase OS=Ochrobactrum anthropi... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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