FC869011

Overview
NameFC869011
Unique NameFC869011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869011_ssr240 microsatellite FC869011_ssr240:240..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9444 contig Ccv1_Contig9444:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 2
Query:  314 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL
Sbjct:    8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELL 121          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 84/114 (73.68%), Postives = 101/114 (88.60%), Query Frame = 2
Query:  314 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            D IQIREVWNDNL+EE  LIR++VD + Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF+L  DIFA DS+ELL
Sbjct:    8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELL 121          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 84/115 (73.04%), Postives = 100/115 (86.96%), Query Frame = 2
Query:  314 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSVELL 655
            D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L  DI+A+DS+ELL
Sbjct:    8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELL 122          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = 2
Query:  314 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A  N N      +YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL
Sbjct:   12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 61/110 (55.45%), Postives = 83/110 (75.45%), Query Frame = 2
Query:  326 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            IR+VW+ NL++E  LI  ++++Y  ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD LK+IQ+GL  SDE GN P     + C WQFNF  FNL DD++A +S+ELL
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELL 126          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  323 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELL 116          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  323 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELL 116          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  323 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELL 116          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  323 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELL 116          
BLAST of FC869011 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.738e-29
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  323 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELL 655
            +I EVW  NLEEE   IR++  K+NYIAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL
Sbjct:   11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELL 116          
The following BLAST results are available for this feature:
BLAST of FC869011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CAF1J_ARATH4.064e-4979.82Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH2.465e-4673.68Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1G_ARATH2.726e-4573.04Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1B_ARATH4.503e-4066.67Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO9.412e-3055.45Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_MOUSE1.229e-2958.56CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.229e-2958.56CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.229e-2958.56CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN1.229e-2958.56CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_DANRE2.738e-2959.46CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionC31007E10EF AbioticL1 Citrus clementina cDNA clone C31007E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869011 ID=FC869011; Name=FC869011; organism=Citrus clementina; type=EST; length=657bp
TCTCTTCTCTCTCCTCTCGCAATTCGTTGACCTCAAAATTTTTCTTCGAA
AGAACACGAAATCACTCAAGATCTGTTCGCTTCGAGTTTTAATTTCATCA
ATCCAAGATCTGTTGAGAAGTGTTGAAACGGTGACGTTTCTTCCAGCGGA
GAGAACCCAGTTCAGGTTTTTGAGGTTTCGAGTTACTTATGATCTGTTTA
CGGATCTGGGCGTTTTAGTGTCTATCTTGTTGGTTGGTATTGTTGTTGTT
GTTGTGTTCAGTTTAGGTTTAAAATTTGCTGTCTTGGAAATGTCGGTTTT
GCCTAAGGGGGGCGATGAAATTCAAATTCGAGAGGTGTGGAATGATAATC
TCGAAGAGGAATTTGCTTTAATTCGTGAAATTGTTGATAAGTATAACTAT
ATAGCCATGGATACGGAGTTCCCAGGCGTGGTTTTACGTCCCGTGGGAGC
TTTTAAGAATATTAATGATTATAACTACCAAACGTTGAAGGATAACGTCG
ACATGTTGAAGTTGATTCAATTGGGTTTAACATTTTCGGATGAAAATGGG
AATTTGCCTACTTGTGGGACTGACAAGTTTTGCATTTGGCAATTCAACTT
TCGCGAGTTTAATTTAATTGATGATATTTTTGCTAGTGATTCAGTTGAGT
TGCTGCA
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