FC869019

Overview
NameFC869019
Unique NameFC869019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9446 contig Ccv1_Contig9446:1..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869019 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  108 METERKKQE---LRHLGFMRIAAINALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVP 308
            METE+K  +   L+HL F+RIA I+ L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVP 70          
BLAST of FC869019 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  123 KKQELRHLGFMRIAAINALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVP 308
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVP 77          
BLAST of FC869019 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   96 RSEDMETERKKQELRHLGFMRIAAINALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVP 308
            ++ +ME   +++ LR+L F++ AA   LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVP 92          
BLAST of FC869019 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   96 RSEDMETERKKQELRHLGFMRIAAINALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVP 308
            ++ +ME   +++ LR+L F++ AA   LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVP 92          
The following BLAST results are available for this feature:
BLAST of FC869019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1736_ARATH4.021e-1662.86REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI3.186e-1354.84Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ5.087e-1146.48REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI5.087e-1146.48REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC31007F07EF AbioticL1 Citrus clementina cDNA clone C31007F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869019 ID=FC869019; Name=FC869019; organism=Citrus clementina; type=EST; length=621bp
GATGTTGGATTTGTTACATATTCTTGAACGCTGCAATCAATAGCAGGCTA
ATTTCTCGCGAGATCTAAAAGCAATATCGAATAATTCATCTTTTGCGCAG
TGAAGATATGGAGACTGAGAGGAAGAAACAGGAACTGAGGCATCTTGGAT
TTATGAGGATAGCCGCGATTAATGCTCTGGTGTGCGTGTCGAGTTTGTAC
GACTACGCAAAACGCAACTCGGGGCCGCTACGCTCGCCGGTTGGGACTGT
CGAAAGCGCAGTGACTGCCGTCGTGGGACCTGTTTATCAGAAATTCAAGG
GCGTGCCTGATGATCTCCTCGTTTTTCTTGATAAGAAGGTATTATTTGGT
TGTTTTTTTGGTTTATTCTCCCCAGATCAATTTTTTTTTTTTAATTTTCT
TTCTTTATTTTCATCATTCTAAGATTTAGAATAATTTTTTCAAAATAGTT
CCTGTGAGGCTTGGGTTCTTCTGAACGTTGGTGGAGAGAATATCGGATTT
TTCTTAGCTTTGGGATTCTGGAATTTGCTGATTTGGGATCTTTTAGGCAT
GAGCTTATAAATAAGATTTGATTTTGTGTGATTATGAATTTATAATCTGA
TATATGAAGTGAAGAACTCCT
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