FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_ARATH (Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.060e-90
Identity = 158/203 (77.83%), Postives = 184/203 (90.64%), Query Frame = 1
Query:   49 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            M SE   P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEEKREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++GVLLTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGSGYPGDPET+
Sbjct:    1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETK 203          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_DROME (Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 111/204 (54.41%), Postives = 137/204 (67.16%), Query Frame = 1
Query:   88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETRXG*QIITHYI 687
            PC++G+DEAGRGPVLGPMVYG  YCP    + L  L  ADSK L E KR+ +F D+   +     VGWAV+II P  +S  M  ++K +LNE+S DSA+GLI + ++ GV + EVY+DTVG  EKYQ KL +RFPS K  V+KKADS YP+VS ASI AKVTRD  L+ W F E        FGSGYPGDP TR   + +T YI
Sbjct:   70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTR---RFLTEYI 270          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_RAT (Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 1
Query:   88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +RE LF  ++ + D VGWA+DI+ P  +S  ML + K NLN +SHD+A GLI   ++  V +T+V++DTVG  E YQA+L QRFP I+  V  KADSL+PVVS ASI+AKV RD+ ++ W F E+ + +  ++GSGYP DP+T+
Sbjct:   28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTK 218          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_HUMAN (Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = 1
Query:   88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            PC++G+DEAGRGPVLGPMVY   YCP      L  L  ADSKTL E +RE LF  ++  D VGWA+D++ P  +S  ML + K NLN +SHD+A GLI   L+ GV +T+V++DTVG  E YQA+L Q FP I+  V  KAD+LYPVVS ASI AKV RD+ ++ W F E  +++  ++GSGYP DP+T+
Sbjct:   28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTK 217          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_MOUSE (Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.767e-53
Identity = 101/191 (52.88%), Postives = 133/191 (69.63%), Query Frame = 1
Query:   88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +RE LF  ++ + D VGWA+D++ P  +S  ML + K NLN +SHD+A GLI   L+  V +T+V++DTVG  E YQA+L Q FP I+  V  KADSL+PVVS ASI AKV RD+ ++ W F E  +++  ++GSGYP DP+T+
Sbjct:   28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTK 218          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_BOVIN (Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 100/197 (50.76%), Postives = 135/197 (68.53%), Query Frame = 1
Query:   70 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            P     PC++G+DEAGRGPVLGPMVY   YCP S  + L  L  ADSKTL E +R+ LF  ++ + D VGWA+D++ P  +S  ML + K NLN +SHD+A GL+   L+ GV + +V++DTVG  E YQ +L QRFP I+  V  KAD+LYPVVS ASI AKV RD+ ++ W F E  +++  ++GSGYP DP+T+
Sbjct:   22 PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTK 218          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_DICDI (Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2a PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 104/196 (53.06%), Postives = 131/196 (66.84%), Query Frame = 1
Query:   82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ETAENMHRNFGSGYPGDP 648
            S P +MGIDEAGRGPV+GPMVYGC Y P S   TL ++ F DSK L E++R++LF+ + + N  + +  D+I    LS KML K  I+LN ISH+SAIGLI  VL  GV + E+YLDTVG  +KYQ  L + FP I K +VSKKADSLYP+VS ASI AKV RD  +    F+     +  E +  +FGSGYP DP
Sbjct:   18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQLSTDFGSGYPSDP 213          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_CAEEL (Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45
Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 1
Query:   88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFGSGYPGDPETR 657
            PC++GIDEAGRGPVLGPMVY     P      L  L   DSK L E KREE+F    ED  +   + +A+  + P  +S  ML + K +LNE+SH++AI LI   L   V + E+ +DTVG    YQAKL + FP I   V++KADSL+P+VS ASI AKVTRD  LR W F E+  +     +GSGYPGDP T+
Sbjct:   21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTK 215          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_SCHPO (Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe GN=rnh201 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 98/198 (49.49%), Postives = 122/198 (61.62%), Query Frame = 1
Query:   82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFGSGYPGDPET 654
            S P  +G+DEAGRGPVLGPMVY   YCP  +   L    FADSKTL   KREEL + +     ++  +VGW+   I  REL+A ML  +NK NLN  +HD+ I LI +V   G+ +TE+Y+DTVG    YQ KL   FP  K  V+KKADSL+P+VS ASI AKVTRD  L     E   E++   N+GSGY  D  T
Sbjct:   61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL-----ECARESIRTENWGSGYSSDART 251          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_YEAST (Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae GN=RNH201 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 95/207 (45.89%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   61 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            +AL +   +P IMGIDEAGRGPVLGPMVY   Y    YQ      N  F DSK L +  R  LF    +D +    +G+A   I P ++S   +K       NLNE +HD  + LI  V+   V L+ VY+DTVG    YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD      + E    +     GSGYP DP+T
Sbjct:   24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEILGSGYPSDPKT 225          
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2A_ARATH1.060e-9077.83Ribonuclease H2 subunit A OS=Arabidopsis thaliana ... [more]
RNH2A_DROME2.913e-5654.41Ribonuclease H2 subunit A OS=Drosophila melanogast... [more]
RNH2A_RAT1.599e-5453.40Ribonuclease H2 subunit A OS=Rattus norvegicus GN=... [more]
RNH2A_HUMAN3.561e-5453.16Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASE... [more]
RNH2A_MOUSE1.767e-5352.88Ribonuclease H2 subunit A OS=Mus musculus GN=Rnase... [more]
RNH2A_BOVIN2.308e-5350.76Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2... [more]
RNH2A_DICDI4.981e-4853.06Ribonuclease H2 subunit A OS=Dictyostelium discoid... [more]
RNH2A_CAEEL5.154e-4548.72Ribonuclease H2 subunit A OS=Caenorhabditis elegan... [more]
RNH2A_SCHPO2.927e-4049.49Ribonuclease H2 subunit A OS=Schizosaccharomyces p... [more]
RNH2A_YEAST1.963e-3645.89Ribonuclease H2 subunit A OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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