FC869038

Overview
NameFC869038
Unique NameFC869038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.489e-25
Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  282 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            +  +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  + I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E  F  N            D +++++
Sbjct:  107 YDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS 251          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  282 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+AM LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N
Sbjct:  107 YDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVN 232          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  282 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+A+ LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N
Sbjct:  107 YDGSTTALEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVN 232          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  282 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            +  S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RN++   +    I++E   AKV+AM LD++ L SV+ FA  + ++   L++L+ NAG  A P+ L+KD +E  F  N
Sbjct:  107 YDGSTTAMEILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVN 232          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  273 PSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF 650
            P  +  ++ A E+  G D +    IVTGA+SGIG ETAR  AL G HVI+A RN +        I+ E   A+V+ + LD++SL SVR+FA  + +   PL++L+ NA + + P+ L++D  E  F
Sbjct:  101 PKRYDGNTGALEILHGQDLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTF 226          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            G T IVTGA++GIG +TA  LA RG ++I+A R+M    AA KD+R     E  +  V+A  LD++SL S+R+FA++   +   ++ILINNAG+M  P   ++D  E+QF  N            D +K +A
Sbjct:   38 GKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRG----ETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA 165          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: YJCD_SCHPO (Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe GN=SPCC736.13 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.896e-16
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  324 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQK 722
            D TG  A+VTG+S GIG  TA  LA +G  V +A RN    + V + I  E+  +K+  + LD+    SV + A  + ++   L+IL+NNAGIM  PF L+KD  ELQ  TN             T+++TA++
Sbjct:   39 DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLLPTLRRTAEE 171          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  282 FSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDA--MELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQF 650
            F + STA +V  G D  G TA++TGA+ GIG ETAR LA  G  +I A RN ++ +   E I +E P+A+       LD+SSL SV++F  E       ++ LI NAG+ A P+  + D +E  F
Sbjct:  104 FDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTF 228          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  312 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            T  +   G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E  F  N            + +K++A
Sbjct:   32 TTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA 166          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: DHRSX_MOUSE (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            G  AIVTGA++GIG  TAR LA  G+ V++A  +   G++V  +I  E+ S +   + LD++SLASVR FA ++ + G PL++L+NNAG+M  P   ++D  E     N
Sbjct:   43 GRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGVN 151          
The following BLAST results are available for this feature:
BLAST of FC869038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
WWOX_CHICK8.489e-2541.38WW domain-containing oxidoreductase OS=Gallus gall... [more]
WWOX_HUMAN3.226e-2446.03WW domain-containing oxidoreductase OS=Homo sapien... [more]
WWOX_PONAB1.226e-2345.24WW domain-containing oxidoreductase OS=Pongo abeli... [more]
WWOX_MOUSE6.084e-2344.44WW domain-containing oxidoreductase OS=Mus musculu... [more]
WWOX_DANRE4.081e-1939.68WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH13_HUMAN6.515e-1740.15Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
YJCD_SCHPO1.896e-1638.35Uncharacterized oxidoreductase C736.13 OS=Schizosa... [more]
WWOX_DROME3.233e-1640.80WW domain-containing oxidoreductase OS=Drosophila ... [more]
RDH12_MOUSE3.233e-1633.33Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
DHRSX_MOUSE4.223e-1642.20Dehydrogenase/reductase SDR family member on chrom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007H02EF AbioticL1 Citrus clementina cDNA clone C31007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869038 ID=FC869038; Name=FC869038; organism=Citrus clementina; type=EST; length=736bp
GAAGTGACCCAACTTTCGAAGGCAACAACGCGATACGAATCTAGCAAGAT
TGCAGTCACACAACCTTCACCGGTCGGTGAATGACTACACGGCTTCCTAA
ACGGCTAATACGTATCAACTGTCGTTGCCCTTCATTCTTGATCGTAACTC
ATAAGAAGCCCGTAACGCTGTAACAACCGTAACTTTGTTTGTGCGAGCTA
AAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAACAT
GTGGCTGTTTAGCAGAAAAGGGCCATCTGGGTTCTCGGCTTCCTCAACAG
CTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCACAGCCATTGTC
ACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTGTCCTTGCCTT
GCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCTGCTGGTAAAG
ATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAAAGTTGATGCC
ATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAATTTGCTTCAGA
ATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAACAATGCAGGAA
TAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGAACTACAGTTT
GCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTTTATTGGACAC
CATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGG
back to top