FC869057

Overview
NameFC869057
Unique NameFC869057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15451 contig Ccv1_Contig15451:46..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++         + C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKSDNGE--WNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 489
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHE 158          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 489
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W LQ E
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE 158          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543
            S+++ G+R+AT S+D ++ ++          T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E       ++     SCIS
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169          
The following BLAST results are available for this feature:
BLAST of FC869057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_OSMMO1.216e-1430.00Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_DANRE2.709e-1431.69Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_XENTR7.883e-1430.00Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_PONAB7.883e-1430.00Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_MOUSE7.883e-1431.69Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_HUMAN7.883e-1430.00Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN7.883e-1430.00Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA7.883e-1430.00Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA7.883e-1430.00Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
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Properties
Property NameValue
Genbank descriptionC31008A09EF AbioticL1 Citrus clementina cDNA clone C31008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869057 ID=FC869057; Name=FC869057; organism=Citrus clementina; type=EST; length=597bp
CATCTGTGCTGTTGAAATTCACGGTTCACGGACATGGACTAACCAGTTGC
GACTCTTGACAAAGGCACAACGAGCTCCTCGTGGAACTACTGTGGCCAGA
GATTAGCCACTGGTTCAACCGACGGCACTCTCTCCATCTTTGACTCACCT
GACCCCTCTTCTTCCCCATTCACCTGCAACCTCAAAACTAAGGTACATGC
GGGTGCCATTTTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGG
TTGCCTGTATTTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTT
GAAGATGCACAGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCAC
TTCGACTCAAGTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTGA
AATTGGTTGCTGCATACTCAGATGGCCATGTTAAAGTTTATGAGCTCCTA
GATCCCTTGATACTGAAAAATTGGCAACTTCAGGCTGAATTTCAGAATGC
TATTGATTCTGTGACTATGTTTAGGAAGGCTTCATGCATATCGGCATCCA
TACTCTTGGAATCCACAGAAGGGTGAAAACCAGGGATCTAGTTTTGT
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