FC869057
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ + C K H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKSDNGE--WNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14 Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 489 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHE 158
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 489 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V+VYE D + L W LQ E Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE 158
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169
BLAST of FC869057 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 79 SWNYCGQRLATGSTDGTLSIFXXXXXXXXXFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 543 S+++ G+R+AT S+D ++ ++ T + KT H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E ++ SCIS Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSCIS 169 The following BLAST results are available for this feature:
BLAST of FC869057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869057 ID=FC869057; Name=FC869057; organism=Citrus clementina; type=EST; length=597bpback to top |