FC869071

Overview
NameFC869071
Unique NameFC869071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length211
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:15..225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.795e-20
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M FNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALG EFKGY
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.795e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M FN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEVSGDALG EFKGY
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M FN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALG EFKGY
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.749e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F+DKRIS E+S D LG E+KGY
Sbjct:    1 MKLNISYPATGCQKLIEVDDEKKLRPFYDKRISAELSADCLGDEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALG E+KGY
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALG E+KGY
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALG E+KGY
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALG E+KGY
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.375e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALG E+KGY
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGY 48
[Close]
BLAST of FC869071 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.714e-11
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:   66 MNFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGGEFKGY 209
            M  NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G EFKGY
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGY 48
The following BLAST results are available for this feature:
BLAST of FC869071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RS6_ASPOF8.795e-2093.7540S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH8.795e-2091.6740S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.149e-1991.6740S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_APLCA6.749e-1262.5040S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_RAT4.375e-1158.3340S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE4.375e-1158.3340S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA4.375e-1158.3340S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN4.375e-1158.3340S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN4.375e-1158.3340S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_YEAST5.714e-1160.4240S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC31008B12EF AbioticL1 Citrus clementina cDNA clone C31008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869071 ID=FC869071; Name=FC869071; organism=Citrus clementina; type=EST; length=211bp
TTTGTGCAGCAGTCGNGAGAGAGAGGAGGAACTCCACTGGGTTAGTCTGA
TAGCTGCAGAACAAAATGAATTTCAATATTGCAAATCCCACCACTGGGTG
CCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAGCATTTTTCG
ACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGGGGGGAGTTC
AAAGGTTATGT
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