FC869078

Overview
NameFC869078
Unique NameFC869078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.631e-43
Identity = 86/115 (74.78%), Postives = 99/115 (86.09%), Query Frame = 1
Query:  352 MGKGGMSQGE---KKDGEEVNMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRC 687
            MGKGG S+     K+ GEE NMAAWL+G+ TLKIQP+ LPSLGPYD  VR+KAVGICGSDVH+ KT+RCA+F+VK+PMVIGHECAG+IE+VGSEVK LV GDRVALEPGISC RC
Sbjct:    1 MGKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRC 114          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI 672
            N++  + G   ++++ + +P LGP D L++M +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGV 98          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI 672
            N++  + G   ++++ + +P LGP D L++M +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGV 98          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI 672
            N++  + G   L+++ + +P  GP + L+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG+
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGV 98          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 669
            N++  + G   L+++ + +P  GP + L+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPG 97          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 669
            N++  + G   L+++ + +P  GP + L+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPG 97          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 669
            N++  + G   L+++ + +P  GP + L++M +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPG 96          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.776e-19
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 669
            N++  + G   L+++ + +P  GP + L++M +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPG 94          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  409 AAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRC 687
            AA +     +KI+   +P +   + L+++ AVGICGSD+HY    R  ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C RC
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRC 103          
BLAST of FC869078 vs. ExPASy Swiss-Prot
Match: DHSO_PIG (Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN=SORD PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  403 NMAAWLMGVNTLKIQPFELPSLGPYDGLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 669
            N++  + G   L+++ + +P  GP   L++M +VGICGSDVHY +  R  +FVVK+PMV+GHE +G   KVGS V  L PGDR A EPG
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNXVLLKMHSVGICGSDVHYWQHGRIGNFVVKKPMVLGHEASGTXVKVGSLVTHLKPGDRXAXEPG 96          
The following BLAST results are available for this feature:
BLAST of FC869078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
IDND_VITVI3.631e-4374.78L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_RAT4.615e-2253.33Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MOUSE4.615e-2253.33Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_MACFA1.343e-2152.22Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_HUMAN1.754e-2152.81Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_PONAB2.991e-2152.81Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_BOVIN2.532e-2051.69Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP4.776e-1950.56Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU1.389e-1845.16Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_PIG1.176e-1749.44Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionC31008C08EF AbioticL1 Citrus clementina cDNA clone C31008C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869078 ID=FC869078; Name=FC869078; organism=Citrus clementina; type=EST; length=688bp
GGGGGTCCATAAATTCTGAAAACCAAAAAAACAAACAACAAACGGTTCTG
AAACCGATAAATTCTCTCCACGTAAGCACGTTATCCTGTTGAAAAAAGAA
ACCATAATCTCTATCACAAATTTTTTAAAACTATCATTAGTAATTGGATT
TTTACTTAAATAAAAATTAGTCCGATGAAAACAGAAATCAATCATCTACA
CGGATAAATACAAAGAACACTTGATGTTATTCCTGCGGCCGAATCAAATC
ATATCCCATATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTGTGTAC
AGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAA
TATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAG
TTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCT
TTTGAGCTTCCTTCTCTGGGACCATATGATGGTTTAGTCAGGATGAAAGC
CGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTG
CCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGG
GTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCG
TGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCG
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