FC869084

Overview
NameFC869084
Unique NameFC869084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869084_ssr14 microsatellite FC869084_ssr14:14..25. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of FC869084 vs. ExPASy Swiss-Prot
Match: Y194_SYNY3 (Uncharacterized protein sll0194 OS=Synechocystis sp. (strain PCC 6803) GN=sll0194 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  495 LPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLXAPVKSEGVRFLQLAPGEIF 689
            +PDD EMS+FDHL+ELR RIF+S+ AV   ++ CF + K L+ +L  P  +  V+FLQL+PGE F
Sbjct:   21 VPDDVEMSLFDHLDELRTRIFLSLGAVLVGVVACFIFVKPLVQWLQVPAGT--VKFLQLSPGEFF 83          
The following BLAST results are available for this feature:
BLAST of FC869084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y194_SYNY39.645e-1252.31Uncharacterized protein sll0194 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionC31008D03EF AbioticL1 Citrus clementina cDNA clone C31008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869084 ID=FC869084; Name=FC869084; organism=Citrus clementina; type=EST; length=690bp
GAGGAGACAACCGTTCATTCATTCAAACTGATATAATAGCGCTTCATAGT
TTGGTTCAAACGAACCAACTTTCAGACGTTGTCTAGTTCAATTTTCAGAA
AAACAACAGAAAAGGAAAATTAGACGAGAAAATGGGAAGCACGAGCACGG
CACTCATGGCTCACTTGCGGCTAAGCTACGGCTGCTTCTCTAAACGACAC
GAGCCAATCAGAAACCGAATGAAAAGTGTGAAAGTTAACAGTAGTTCGAA
GCTGAGATTCGGCGTTTCGCGGAGCAGGAGGAGGTTTGAAGATGCACTCA
TTTGTTTTGCTGCGTTTGACGGTGATGATGCGAGGGATAATCAGCCTGAA
TCAGATTCTAGTGGTGGTGTCGGCTCTGCTGTTGAAGATAGACCTGATGT
GACTGATATTCCAAGAGATGAAACACTGGAAAATCTAAACCAAGATGGTG
TGGAAAGTCCTCTTTATAATTTTCTGTACCCTGATAAAGAGCTACTCCCA
GATGATAAAGAAATGAGTATATTTGATCATCTAGAAGAGCTGCGCCAGAG
AATATTCGTGTCAGTTTTAGCAGTTGGAGCTGCTATCTTGGGATGCTTTG
CATATTCCAAGGAGCTGATAATGTTTCTTNGAGCTCCTGTTAAATCAGAG
GGTGTACGATTTCTGCAGTTAGCTCCTGGAGAAATTTTCT
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